在C14H30上训练线性烷烃的目标可转移机器学习潜力,并在C4H10至C30H62上进行测试。

IF 5.7 1区 化学 Q2 CHEMISTRY, PHYSICAL
Journal of Chemical Theory and Computation Pub Date : 2025-04-08 Epub Date: 2025-03-27 DOI:10.1021/acs.jctc.4c01793
Chen Qu, Paul L Houston, Thomas Allison, Joel M Bowman
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引用次数: 0

摘要

考虑到线性烷烃在基础研究和应用研究中的重要性,准确的机器学习潜力(MLP)将是这些碳氢化合物计算建模的重大进步。最近,我们报道了一种新颖的多体排列不变量模型,该模型专门针对44个原子的碳氢化合物C14H30在大约250,000 B3LYP能量上进行了训练(Qu, C.;休斯顿,p.l.;艾莉森,t;施耐德,b.i.;鲍曼,j.m.j. Chem。理论计算。2024,20,9339-9353)。在这里,我们证明了从丁烷C4H10到C30H62的线性烷烃的这种电位可转移性的准确性。与其他旨在普遍适用的可转移性方法不同,本方法针对的是线性烷烃。丁烷的平均绝对误差为0.26 kcal/mol, C30H62的平均绝对误差为0.73 kcal/mol,丁烷的平均绝对误差为80 kcal/mol, C30H62的平均绝对误差为600 kcal/mol。这些值对于可转移潜力来说是前所未有的,表明目标可转移潜力具有很高的性能。构象势垒与戊烷的高水平从头计算非常吻合,戊烷是已报道过的用这种方法计算的最大的烷烃。通过分子动力学计算,给出了C30H62的振动功率谱,并进行了简要讨论。最后,电势的计算时间随原子数呈线性变化。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Targeted Transferable Machine-Learned Potential for Linear Alkanes Trained on C14H30 and Tested for C4H10 to C30H62.

Given the great importance of linear alkanes in fundamental and applied research, an accurate machine-learned potential (MLP) would be a major advance in computational modeling of these hydrocarbons. Recently, we reported a novel, many-body permutationally invariant model that was trained specifically for the 44-atom hydrocarbon C14H30 on roughly 250,000 B3LYP energies (Qu, C.; Houston, P. L.; Allison, T.; Schneider, B. I.; Bowman, J. M. J. Chem. Theory Comput. 2024, 20, 9339-9353). Here, we demonstrate the accuracy of the transferability of this potential for linear alkanes ranging from butane C4H10 up to C30H62. Unlike other approaches for transferability that aim for universal applicability, the present approach is targeted for linear alkanes. The mean absolute error (MAE) for energy ranges from 0.26 kcal/mol for butane and rises to 0.73 kcal/mol for C30H62 over the energy range up to 80 kcal/mol for butane and 600 kcal/mol for C30H62. These values are unprecedented for transferable potentials and indicate the high performance of a targeted transferable potential. The conformational barriers are shown to be in excellent agreement with high-level ab initio calculations for pentane, the largest alkane for which such calculations have been reported. Vibrational power spectra of C30H62 from molecular dynamics calculations are presented and briefly discussed. Finally, the evaluation time for the potential is shown to vary linearly with the number of atoms.

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来源期刊
Journal of Chemical Theory and Computation
Journal of Chemical Theory and Computation 化学-物理:原子、分子和化学物理
CiteScore
9.90
自引率
16.40%
发文量
568
审稿时长
1 months
期刊介绍: The Journal of Chemical Theory and Computation invites new and original contributions with the understanding that, if accepted, they will not be published elsewhere. Papers reporting new theories, methodology, and/or important applications in quantum electronic structure, molecular dynamics, and statistical mechanics are appropriate for submission to this Journal. Specific topics include advances in or applications of ab initio quantum mechanics, density functional theory, design and properties of new materials, surface science, Monte Carlo simulations, solvation models, QM/MM calculations, biomolecular structure prediction, and molecular dynamics in the broadest sense including gas-phase dynamics, ab initio dynamics, biomolecular dynamics, and protein folding. The Journal does not consider papers that are straightforward applications of known methods including DFT and molecular dynamics. The Journal favors submissions that include advances in theory or methodology with applications to compelling problems.
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