{"title":"量化环境温度对基因表达的影响:李亚普诺夫指数和多分形维度方法","authors":"F. Nemati, S. Behnia","doi":"10.1016/j.cjph.2025.02.041","DOIUrl":null,"url":null,"abstract":"<div><div>Our understanding of the protein synthesis mechanism has influenced our ability to provide microorganisms with the conditions for adapting to future environmental change. In this study, theoretical modeling by considering the environment temperature and the delay in response of mRNA level to variation of protein and mRNA degradation rate has been proposed. The influence of environment temperature and time delay in gene regulation results in oscillatory behavior at the mRNA level. An elevation in the mRNA degradation rate proficiently governs the protein synthesis pathway, while an increment in the protein degradation rate yields a limiting effect on the transcriptional phase. Transcription steps can be controlled, by controlling the length of time delay. The calculation of Lyapunov exponents across a broad spectrum of values reveals the inherent chaos within the dynamics of protein synthesis.</div></div>","PeriodicalId":10340,"journal":{"name":"Chinese Journal of Physics","volume":"95 ","pages":"Pages 358-370"},"PeriodicalIF":4.6000,"publicationDate":"2025-03-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Quantifying the environment's temperature effect on gene expression: Lyapunov exponent and multifractal dimension approach\",\"authors\":\"F. Nemati, S. Behnia\",\"doi\":\"10.1016/j.cjph.2025.02.041\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div><div>Our understanding of the protein synthesis mechanism has influenced our ability to provide microorganisms with the conditions for adapting to future environmental change. In this study, theoretical modeling by considering the environment temperature and the delay in response of mRNA level to variation of protein and mRNA degradation rate has been proposed. The influence of environment temperature and time delay in gene regulation results in oscillatory behavior at the mRNA level. An elevation in the mRNA degradation rate proficiently governs the protein synthesis pathway, while an increment in the protein degradation rate yields a limiting effect on the transcriptional phase. Transcription steps can be controlled, by controlling the length of time delay. The calculation of Lyapunov exponents across a broad spectrum of values reveals the inherent chaos within the dynamics of protein synthesis.</div></div>\",\"PeriodicalId\":10340,\"journal\":{\"name\":\"Chinese Journal of Physics\",\"volume\":\"95 \",\"pages\":\"Pages 358-370\"},\"PeriodicalIF\":4.6000,\"publicationDate\":\"2025-03-26\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Chinese Journal of Physics\",\"FirstCategoryId\":\"101\",\"ListUrlMain\":\"https://www.sciencedirect.com/science/article/pii/S0577907325000826\",\"RegionNum\":2,\"RegionCategory\":\"物理与天体物理\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q1\",\"JCRName\":\"PHYSICS, MULTIDISCIPLINARY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Chinese Journal of Physics","FirstCategoryId":"101","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S0577907325000826","RegionNum":2,"RegionCategory":"物理与天体物理","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q1","JCRName":"PHYSICS, MULTIDISCIPLINARY","Score":null,"Total":0}
Quantifying the environment's temperature effect on gene expression: Lyapunov exponent and multifractal dimension approach
Our understanding of the protein synthesis mechanism has influenced our ability to provide microorganisms with the conditions for adapting to future environmental change. In this study, theoretical modeling by considering the environment temperature and the delay in response of mRNA level to variation of protein and mRNA degradation rate has been proposed. The influence of environment temperature and time delay in gene regulation results in oscillatory behavior at the mRNA level. An elevation in the mRNA degradation rate proficiently governs the protein synthesis pathway, while an increment in the protein degradation rate yields a limiting effect on the transcriptional phase. Transcription steps can be controlled, by controlling the length of time delay. The calculation of Lyapunov exponents across a broad spectrum of values reveals the inherent chaos within the dynamics of protein synthesis.
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The Chinese Journal of Physics publishes important advances in various branches in physics, including statistical and biophysical physics, condensed matter physics, atomic/molecular physics, optics, particle physics and nuclear physics.
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