细菌紫质/TiO2杂化体系在分子水平上的硅研究

IF 5.5 1区 化学 Q2 CHEMISTRY, PHYSICAL
Mayra Avelar, Carmen Coppola, Alessio d’Ettorre, Andrea Ienco, Maria Laura Parisi, Riccardo Basosi, Annalisa Santucci, Massimo Olivucci and Adalgisa Sinicropi*, 
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引用次数: 0

摘要

细菌视紫红质(bR)是一种捕光膜蛋白,是一种很有前途的光电光电器件中TiO2的敏化剂。然而,尽管有大量的实验研究,对bR/TiO2杂化体系的分子水平的理解仍然不令人满意。在这篇文章中,我们报告了这样一个系统的原子模型的构建和分析。为此,我们将分子动力学和量子力学计算应用于锐钛矿TiO2表面上的四种不同bR取向。然后用所得的bR/TiO2模型计算相对于bR的最大光吸收变化。研究结果表明,这四种模型都能重现实验观察到的bR与TiO2结合引起的蓝移值,并可用于研究bR与TiO2的结合和结合诱导的蛋白质修饰。我们认为,所构建的模型可以为未来的研究提供基础,旨在模拟bR/ tio2基太阳能转换装置中复杂的远程电子转移机制,以及在工程bR中实现更高的效率。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
In Silico Study of a Bacteriorhodopsin/TiO2 Hybrid System at the Molecular Level

Bacteriorhodopsin (bR) is a light-harvesting membrane protein that represents a promising sensitizer of TiO2 for photovoltaic and photoelectrochemical devices. However, despite numerous experimental studies, the molecular-level understanding of the bR/TiO2 hybrid system is still unsatisfactory. In this contribution, we report the construction and analysis of an atomistic model of such a system. To do so, both steered molecular dynamics-molecular dynamics and quantum mechanics/molecular mechanics computations are applied to four different bR orientations on the anatase TiO2 surface. The resulting bR/TiO2 models are then used to compute the light absorption maxima changes relative to those of bR. We show that all four models reproduce the experimentally observed blue-shift value induced by bR binding on TiO2 and could be used to study the binding and binding-induced protein modifications. We conclude that the constructed models could provide a basis for future studies aiming to simulate the complex long-range electron transfer mechanism in bR/TiO2-based solar energy conversion devices as well as in engineering bR to achieve enhanced efficiencies.

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来源期刊
Journal of Chemical Theory and Computation
Journal of Chemical Theory and Computation 化学-物理:原子、分子和化学物理
CiteScore
9.90
自引率
16.40%
发文量
568
审稿时长
1 months
期刊介绍: The Journal of Chemical Theory and Computation invites new and original contributions with the understanding that, if accepted, they will not be published elsewhere. Papers reporting new theories, methodology, and/or important applications in quantum electronic structure, molecular dynamics, and statistical mechanics are appropriate for submission to this Journal. Specific topics include advances in or applications of ab initio quantum mechanics, density functional theory, design and properties of new materials, surface science, Monte Carlo simulations, solvation models, QM/MM calculations, biomolecular structure prediction, and molecular dynamics in the broadest sense including gas-phase dynamics, ab initio dynamics, biomolecular dynamics, and protein folding. The Journal does not consider papers that are straightforward applications of known methods including DFT and molecular dynamics. The Journal favors submissions that include advances in theory or methodology with applications to compelling problems.
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