基于网络药理学和分子对接技术,探讨绞股菊逆转宫颈上皮内瘤变的药效学成分及机制。

IF 3.3 2区 医学 Q1 INTEGRATIVE & COMPLEMENTARY MEDICINE
Huifang Wang, Yiling Chen, Tingting Lin
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引用次数: 0

摘要

目的:采用网络药理学方法研究绞股菊逆转宫颈上皮内瘤变(CIN)的药效学成分,并通过分子对接技术分析其作用机制。方法:在TCMSP、Pubchem、Swiss target Prediction、GenCards、WebGestalt、STRING等数据库中检索绞股草的有效成分、靶点及CIN的疾病靶点。基于以上数据和Cytoscape软件,我们绘制了蛋白-蛋白相互作用(PPI)共表达网络。从富集分析的角度确定绞股蓝对CIN的作用机制。我们在AutoDock上进行了分子对接。最后,我们进行了细胞实验进行验证。结果:获得了85个与绞盘草有效成分匹配的靶点,2512个与cin相关的作用靶点。前5位绞股菊的5种成分及靶点的结度值分别为IL6、IL1β、TNF、TP53、PTGS2。绞股蓝有效活性成分与CIN有52个交叉靶点。PPI网络图显示,主要活性成分MOL000098(槲皮素)的靶点最多(40个),其次是MOL000351(鼠黄素)(17个)。基因本体(Gene Ontology, GO)分析发现,RNA聚合酶II启动子、细胞质、胞外空间和酶结合、锌离子结合等对转录的调控。京都基因与基因组百科全书(KEGG)途径鉴定了114条信号通路。这些途径主要富集于RNA聚合酶II启动子转录的正调控、基因表达的正调控、细胞质、胞外空间、酶结合、锌离子结合、癌症、流体剪切应力和动脉粥样硬化等途径。il - 6、il -1 β、TNF、TP53、PTGS2与槲皮素、鼠李糖苷、绞股蓝苷XXVII_qt、绞股蓝苷XXVII_qt的结合能均小于-5 kcal·mol-1。实验组il - 6、il - 1β、TNF、PTGS2 mRNA表达量较高(t = 105.700、32.450、18.190、100.400),均为P。结论:绞股蓝可能通过槲皮素、鼠李糖苷、绞股蓝总皂苷的靶向作用,通过多种途径逆转CIN。我们的研究初步探讨了绞股蓝逆转CIN的药效学成分和作用机制,并通过细胞和分子生物学实验验证了可能的作用机制,了解绞股蓝在CIN中的药理作用机制,为新药和临床试验研究提供数据参考,对临床治疗决策具有重要意义。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Based on network pharmacology and molecular docking technology to explore the pharmacodynamic components and mechanism of Gynostemmae Pentaphylli Herba reversing Cervical intraepithelial neoplasia.

Objective: To investigate the pharmacodynamic components of Gynostemmae Pentaphylli Herba reversing Cervical intraepithelial neoplasia (CIN) were investigated by network pharmacology, and the mechanism of action was analyzed by molecular docking technology.

Methods: The effective components and targets of Gynostemmae Pentaphylli Herba and the disease target of CIN were searched in TCMSP, Pubchem, Swiss Target Prediction, GenCards, WebGestalt, and STRING. Based on the above data and the Cytoscape software, we mapped the protein-protein interaction (PPI) co-expression network. The mechanism of Gynostemmae Pentaphylli Herba CIN treatment was identified from the enrichment analysis perspective. We performed molecular docking on the AutoDock. Finally, we carried out cell experiments for verification.

Results: Eighty-five targets matching the active ingredients of Gynostemmae Pentaphylli Herba, and 2512 CIN-related action targets were obtained. The nodal degree values of five components and the target of Gynostemmae Pentaphylli Herba in the top 5 were IL6, IL1β, TNF, TP53, and PTGS2. There were 52 intersection targets of the effective active ingredient of Gynostemmae Pentaphylli Herba and CIN. The PPI network map suggested that the main active ingredient MOL000098 (Quercetin) had the most targets (40), followed by MOL000351 (Rhamnazin) (17). Gene Ontology (GO) analysis yielded the regulation of transcription from RNA polymerase II promoter, cytoplasm, extracellular space and enzyme binding, zinc ion binding, etc. The Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway identified 114 signaling pathways. These pathways were mainly enriched in positive regulation of transcription from RNA polymerase II promoter, positive regulation of gene expression, cytoplasm, extracellular space, enzyme binding, zinc ion binding, Pathways in cancer, Fluid shear stress and atherosclerosis, etc. The binding energies of IL6, IL1β, TNF, TP53, and PTGS2 with Quercetin, Rhamnazin, Gypenoside XXVII_qt and Gypenoside XXVIII_qt were all less than -5 kcal·mol-1, respectively. The messenger ribonucleic acid (mRNA) expressions of IL6, IL1β, TNF, and PTGS2 in the experimental group were higher (t = 105.700, 32.450, 18.190, and 100.400, all P < 0.001), and the mRNA expressions of TP53 was lower compared with the control group (t = 8.362, all P = 0.001).

Conclusion: Gynostemmae Pentaphylli Herba may reverse CIN through targeted action of Quercetin, Rhamnazin, and gypenosides, as well as various pathways. Our study preliminarily explored the pharmacodynamic components and mechanism of the reversal of CIN by Gynostemmae Pentaphylli Herba and verified the possible mechanism of action through cell and molecular biology experiments to understand the pharmacological mechanism of Gynostemmae Pentaphylli Herba in CIN and provide data reference for new drugs and clinical trials research, which will be of great significance for clinical treatment decisions.

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BMC Complementary Medicine and Therapies
BMC Complementary Medicine and Therapies INTEGRATIVE & COMPLEMENTARY MEDICINE-
CiteScore
6.10
自引率
2.60%
发文量
300
审稿时长
19 weeks
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