实现自动合成、链端降解和快速质谱分析的工作流程,用于序列定义的低聚氨基甲酸酯的分子信息存储

IF 8.5 Q1 CHEMISTRY, MULTIDISCIPLINARY
Julia R. Shuluk, Christopher D. Wight, James R. Howard, Mary E. King, Sarah R. Moor, Rachel J. DeHoog, Samuel D. Dahlhauser, Livia S. Eberlin* and Eric V. Anslyn*, 
{"title":"实现自动合成、链端降解和快速质谱分析的工作流程,用于序列定义的低聚氨基甲酸酯的分子信息存储","authors":"Julia R. Shuluk,&nbsp;Christopher D. Wight,&nbsp;James R. Howard,&nbsp;Mary E. King,&nbsp;Sarah R. Moor,&nbsp;Rachel J. DeHoog,&nbsp;Samuel D. Dahlhauser,&nbsp;Livia S. Eberlin* and Eric V. Anslyn*,&nbsp;","doi":"10.1021/jacsau.4c0107010.1021/jacsau.4c01070","DOIUrl":null,"url":null,"abstract":"<p >The field of molecular information storage has recently expanded to include abiotic sequence-defined polymers. While robust methods have been developed, there is a current bottleneck in the throughput of this work as information density is increased. Herein, we introduce an automated workflow in which a commercial peptide synthesizer composed of a single XYZ liquid-handling robot was adapted to both synthesize and sequence sequence-defined oligourethanes. Our sequencing method was improved to cut down the number of samples required for each oligomer from 13 to one. Additionally, we introduce the use of desorption electrospray ionization mass spectrometry as our analysis method for sequencing, which allowed for simplified and increased speed of data acquisition. Finally, we created a Python script that is able to reconstruct the sequence information from the MS data in an automated fashion. We demonstrate this new workflow by encoding and decoding a quote from the late Maya Angelou: “When you learn, teach, when you get, give”.</p>","PeriodicalId":94060,"journal":{"name":"JACS Au","volume":"5 3","pages":"1232–1242 1232–1242"},"PeriodicalIF":8.5000,"publicationDate":"2025-02-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://pubs.acs.org/doi/epdf/10.1021/jacsau.4c01070","citationCount":"0","resultStr":"{\"title\":\"A Workflow Enabling the Automated Synthesis, Chain-End Degradation, and Rapid Mass Spectrometry Analysis for Molecular Information Storage in Sequence-Defined Oligourethanes\",\"authors\":\"Julia R. Shuluk,&nbsp;Christopher D. Wight,&nbsp;James R. Howard,&nbsp;Mary E. King,&nbsp;Sarah R. Moor,&nbsp;Rachel J. DeHoog,&nbsp;Samuel D. Dahlhauser,&nbsp;Livia S. Eberlin* and Eric V. Anslyn*,&nbsp;\",\"doi\":\"10.1021/jacsau.4c0107010.1021/jacsau.4c01070\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p >The field of molecular information storage has recently expanded to include abiotic sequence-defined polymers. While robust methods have been developed, there is a current bottleneck in the throughput of this work as information density is increased. Herein, we introduce an automated workflow in which a commercial peptide synthesizer composed of a single XYZ liquid-handling robot was adapted to both synthesize and sequence sequence-defined oligourethanes. Our sequencing method was improved to cut down the number of samples required for each oligomer from 13 to one. Additionally, we introduce the use of desorption electrospray ionization mass spectrometry as our analysis method for sequencing, which allowed for simplified and increased speed of data acquisition. Finally, we created a Python script that is able to reconstruct the sequence information from the MS data in an automated fashion. We demonstrate this new workflow by encoding and decoding a quote from the late Maya Angelou: “When you learn, teach, when you get, give”.</p>\",\"PeriodicalId\":94060,\"journal\":{\"name\":\"JACS Au\",\"volume\":\"5 3\",\"pages\":\"1232–1242 1232–1242\"},\"PeriodicalIF\":8.5000,\"publicationDate\":\"2025-02-19\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://pubs.acs.org/doi/epdf/10.1021/jacsau.4c01070\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"JACS Au\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://pubs.acs.org/doi/10.1021/jacsau.4c01070\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q1\",\"JCRName\":\"CHEMISTRY, MULTIDISCIPLINARY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"JACS Au","FirstCategoryId":"1085","ListUrlMain":"https://pubs.acs.org/doi/10.1021/jacsau.4c01070","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q1","JCRName":"CHEMISTRY, MULTIDISCIPLINARY","Score":null,"Total":0}
引用次数: 0

摘要

分子信息存储领域最近已经扩展到包括非生物序列定义的聚合物。虽然已经开发了健壮的方法,但随着信息密度的增加,这项工作的吞吐量目前存在瓶颈。在这里,我们介绍了一个自动化的工作流程,其中一个由单个XYZ液体处理机器人组成的商业肽合成器适用于合成和测序序列定义的低聚氨基甲酸乙酯。我们改进了测序方法,将每个低聚物所需的样品数量从13个减少到1个。此外,我们引入了解吸电喷雾电离质谱法作为我们的测序分析方法,这允许简化和提高数据采集速度。最后,我们创建了一个Python脚本,它能够以自动化的方式从MS数据中重建序列信息。我们通过编码和解码已故的玛雅·安杰洛的一句话来展示这个新的工作流程:“当你学习时,教,当你得到时,给予”。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
A Workflow Enabling the Automated Synthesis, Chain-End Degradation, and Rapid Mass Spectrometry Analysis for Molecular Information Storage in Sequence-Defined Oligourethanes

The field of molecular information storage has recently expanded to include abiotic sequence-defined polymers. While robust methods have been developed, there is a current bottleneck in the throughput of this work as information density is increased. Herein, we introduce an automated workflow in which a commercial peptide synthesizer composed of a single XYZ liquid-handling robot was adapted to both synthesize and sequence sequence-defined oligourethanes. Our sequencing method was improved to cut down the number of samples required for each oligomer from 13 to one. Additionally, we introduce the use of desorption electrospray ionization mass spectrometry as our analysis method for sequencing, which allowed for simplified and increased speed of data acquisition. Finally, we created a Python script that is able to reconstruct the sequence information from the MS data in an automated fashion. We demonstrate this new workflow by encoding and decoding a quote from the late Maya Angelou: “When you learn, teach, when you get, give”.

求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
CiteScore
9.10
自引率
0.00%
发文量
0
审稿时长
10 weeks
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术官方微信