模板合成方法和PCS141数据库在DFT成本下具有光谱精度的分子结构。

IF 3.1 2区 化学 Q3 CHEMISTRY, PHYSICAL
Federico Lazzari, Silvia Di Grande, Luigi Crisci, Marco Mendolicchio, Vincenzo Barone
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引用次数: 0

摘要

通过将量子化学模型与机器学习技术相结合的新策略,以密度泛函理论成本计算气相大分子的精确几何参数。第一个关键步骤是扩展精确的半实验平衡结构数据库,其中包含由Pisa复合方案版本2优化的额外分子几何结构。然后,采用模板合成方法,利用混合密度泛函与双zeta基集配对,利用化学相似性聚类不同的分子环境,优化键长和价角,提高结构优化的精度。一组原型生物分子构建块被用来证明,对于太大而无法用最先进的复合波函数方法处理的分子系统,实现光谱精度是可能的。此外,还开发了一个免费访问的基于网络的工具,以促进使用标准电子结构代码优化几何图形的后处理,从而为中大型分子的计算研究提供了一个准确而高效的工具,也可供实验导向的研究人员使用。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Molecular structures with spectroscopic accuracy at DFT cost by the templating synthon approach and the PCS141 database.

The computation of accurate geometric parameters at density functional theory cost for large molecules in the gas phase is addressed through a novel strategy that combines quantum chemical models with machine learning techniques. The first key step is the expansion of a database of accurate semi-experimental equilibrium structures with additional molecular geometries optimized by version 2 of the Pisa composite scheme. Then, the templating synthon approach is used to improve the accuracy of structures optimized by a hybrid density functional paired with a double zeta basis set, leveraging chemical similarity to cluster different molecular environments and refine bond lengths and valence angles. A set of prototypical biomolecular building blocks is used to demonstrate that it is possible to achieve spectroscopic accuracy for molecular systems too large to be treated by state-of-the-art composite wavefunction methods. In addition, a freely accessible web-based tool has been developed to facilitate the post-processing of geometries optimized using standard electronic structure codes, thereby providing an accurate and efficient tool for the computational study of medium- to large-sized molecules, also accessible to experiment-oriented researchers.

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来源期刊
Journal of Chemical Physics
Journal of Chemical Physics 物理-物理:原子、分子和化学物理
CiteScore
7.40
自引率
15.90%
发文量
1615
审稿时长
2 months
期刊介绍: The Journal of Chemical Physics publishes quantitative and rigorous science of long-lasting value in methods and applications of chemical physics. The Journal also publishes brief Communications of significant new findings, Perspectives on the latest advances in the field, and Special Topic issues. The Journal focuses on innovative research in experimental and theoretical areas of chemical physics, including spectroscopy, dynamics, kinetics, statistical mechanics, and quantum mechanics. In addition, topical areas such as polymers, soft matter, materials, surfaces/interfaces, and systems of biological relevance are of increasing importance. Topical coverage includes: Theoretical Methods and Algorithms Advanced Experimental Techniques Atoms, Molecules, and Clusters Liquids, Glasses, and Crystals Surfaces, Interfaces, and Materials Polymers and Soft Matter Biological Molecules and Networks.
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