适应负荷的表观遗传特征的发展和验证。

IF 3.8 3区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY
Jonviea D Chamberlain, Daniel Ackermann, Murielle Bochud, Tom Booth, Laurence Chapatte, Janie Corley, Simon R Cox, Sarah E Harris, Cassandre Kinnaer, Robert-Paul Juster, Isabella Locatelli, David Nanchen, Belène Ponte, Menno Pruijm, Sylvain Pradervand, Paul G Shiels, Silvia Stringhini, Sébastien Nusslé, Semira Gonseth-Nusslé
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引用次数: 0

摘要

适应负荷(AL)的概念测量生理失调,以应对内部和外部的压力,积累在整个生命过程。在各种研究中,AL一直与慢性疾病风险有关。但是,在其运作方面有相当大的差异。在本研究中,来自瑞士高血压基因肾脏项目(SKIPOGH)队列的DNA甲基化(DNAm)数据(使用Illumina Infinium MethylationEPIC BeadChip (EPIC)阵列)被用于发现表观基因组关联研究(EWAS),以确定与AL表型测量相关的CpG位点。弹性网络线性回归模型被用于估计AL (methAL)的表观遗传特征。包括Illumina HumanMethylation450K (HM450K)分析兼容签名(methALT)。甲基alt特征在1936年洛锡安出生队列(LBC1936)中得到了验证,这是一项基于人群的前瞻性队列研究。我们发现,在SKIPOGH (R2= 0.59)和LBC1936 (R2=0.16)队列中,甲基AL特征与AL的临床表型呈正相关。在验证队列中,当校正所有潜在混杂因素时,甲基alt特征每增加一个SD,报告CVD病史的几率增加25% (OR=1.25, 95% CI=1.05-1.50),随访开始时全因死亡率增加近两倍(HR= 1.68, 95% CI= 1.33-2.13)。综上所述,与AL评分相比,AL的表观遗传特征不仅与基于表型的AL评分相关,而且与CVD史和全因死亡率也有更强的相关性。金属特征可以帮助缓解研究间比较的问题。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Development and validation of an epigenetic signature of allostatic load.

The allostatic load (AL) concept measures physiological dysregulation in response to internal and external stressors that accumulate across the life course. AL has been consistently linked to chronic disease risk across studies. However, there is considerable variation in its operationalization. In the present study, DNA methylation (DNAm) data (using the Illumina Infinium MethylationEPIC BeadChip array) from the Swiss Kidney Project on Genes in Hypertension (SKIPOGH) cohort, a Swiss-based family cohort study, were used in a discovery epigenome-wide association study to identify cytosine-guanine nucleotide sites associated with phenotypic measures of AL. Elastic net linear regression models were used to estimate an epigenetic signature of AL (methAL), including an Illumina HumanMethylation450K (HM450K) assay-compatible signature (methALT). The methALT signature was validated in the 1936 Lothian Birth Cohort (LBC1936), population-based prospective cohort study. We found that the methAL signature was positively associated with the clinical phenotype of AL in both the SKIPOGH (R2 = 0.59) and LBC1936 (R2 = 0.16) cohorts. In the validation cohort, a one standard deviation increase in methALT signature was associated with 25% higher odds of reported history of cardiovascular disease (CVD) (odd ratio [OR] = 1.25, 95% confidence interval [CI] = 1.05-1.50), and a nearly two-fold increase in all-cause mortality rate at the beginning of follow-up (hazard ratio = 1.68, 95% CI = 1.33-2.13) when adjusting for all potential confounders. In conclusion, the epigenetic signature for AL not only correlated well with phenotype-based AL scores but also exhibited a stronger association with the history of CVD and all-cause mortality compared with AL scores. The methAL signature could help assuage issues of comparison across studies.

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来源期刊
Bioscience Reports
Bioscience Reports 生物-细胞生物学
CiteScore
8.50
自引率
0.00%
发文量
380
审稿时长
6-12 weeks
期刊介绍: Bioscience Reports provides a home for sound scientific research in all areas of cell biology and molecular life sciences. Since 2012, Bioscience Reports has been fully Open Access and publishes all papers under the liberal CC BY licence, giving the life science community quality research to share and discuss.Content before 2012 is subscription-only, and is accessible via archive purchase. Articles are assessed on soundness, providing a home for valid findings and data. We welcome papers that span disciplines (e.g. chemistry, medicine), including papers describing: -new methodologies -tools and reagents to probe biological questions -mechanistic details -disease mechanisms -metabolic processes and their regulation -structure and function -bioenergetics
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