Shangzhou Li, Ping Dong, Hui Zhang, Xin Xu, Lei Shi, Tong Sun, Hongbo Qiao, Jibo Yue, Wei Guo
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First, remote sensing data extracted host factors, including wheat spatial distribution, key phenological (KPh) stages defined by Day of Year (DOY), and early physiological changes. This information, along with meteorological features, topographic factors, and sampling coordinates, was utilized to construct an ENM based on Maximum Entropy (MaxEnt) algorithm. MaxEnt evaluation results guided input adjustments, ensuring high AUC output to characterize initial infection levels for SEI model. Next, transition rates in SEI model were determined by the coupling of the parameterized response functions of daily temperature, relative humidity, and DOY for KPh stages to mechanize the EM. The mechanistic model (MM), with optimal parameter values derived from sensitivity analysis and optimization, provided a robust prediction of disease occurrence on the sampling day and enabled spatiotemporal dynamic simulation of wheat FHB. The final MM achieved a coefficient of determination of 0.83, mean absolute error of 0.06, root mean square error of 0.072, and classification F1-score of 0.88. The simulated disease progression curve was consistent with the epidemiological characteristics of FHB, exhibiting an S-shaped pattern. These results suggest that integrating remote sensing and meteorological data with MaxEnt and SEI models for FHB prediction holds significant application potential.</div></div>","PeriodicalId":50627,"journal":{"name":"Computers and Electronics in Agriculture","volume":"234 ","pages":"Article 110255"},"PeriodicalIF":8.9000,"publicationDate":"2025-03-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Integrating ecological niche and epidemiological models to predict wheat fusarium head blight using remote sensing and meteorological data\",\"authors\":\"Shangzhou Li, Ping Dong, Hui Zhang, Xin Xu, Lei Shi, Tong Sun, Hongbo Qiao, Jibo Yue, Wei Guo\",\"doi\":\"10.1016/j.compag.2025.110255\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div><div>Fusarium head blight (FHB) is a major wheat disease worldwide, significantly affecting yield and quality. Disease risk assessment and spatiotemporal dynamic prediction are crucial for effective FHB management and control. Although ecological niche models (ENMs) and epidemiological models (EMs) have been widely applied to assess the potential distribution of diseases and simulate their progression, studies integrating these models with satellite remote sensing and meteorological data for crop disease prediction remain limited. To fill this gap, our study developed an integrated prediction framework based on susceptible-exposed-infected (SEI) model. First, remote sensing data extracted host factors, including wheat spatial distribution, key phenological (KPh) stages defined by Day of Year (DOY), and early physiological changes. This information, along with meteorological features, topographic factors, and sampling coordinates, was utilized to construct an ENM based on Maximum Entropy (MaxEnt) algorithm. 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引用次数: 0
摘要
小麦赤霉病(Fusarium head blight, FHB)是世界性的主要小麦病害,严重影响小麦产量和品质。疾病风险评估和时空动态预测是有效管理和控制食物中毒的关键。尽管生态位模型(ENMs)和流行病学模型(EMs)已被广泛应用于评估疾病的潜在分布和模拟疾病的发展,但将这些模型与卫星遥感和气象数据相结合用于作物疾病预测的研究仍然有限。为了填补这一空白,我们的研究开发了一个基于易感暴露感染(SEI)模型的综合预测框架。首先,利用遥感数据提取小麦空间分布、关键物候期(KPh)和早期生理变化等寄主因子;利用这些信息,连同气象特征、地形因子和采样坐标,构建基于最大熵(MaxEnt)算法的ENM。MaxEnt评估结果指导输入调整,确保高AUC输出来表征SEI模型的初始感染水平。然后,通过对KPh阶段的日温度、相对湿度和DOY参数化响应函数的耦合来确定SEI模型的转换速率,从而实现EM的机械化。通过敏感性分析和优化得到最优参数值的机制模型(MM)提供了对采样日疾病发生的稳健预测,并实现了小麦FHB的时空动态模拟。最终MM的决定系数为0.83,平均绝对误差为0.06,均方根误差为0.072,分类f1评分为0.88。模拟的疾病进展曲线与FHB的流行病学特征一致,呈s型分布。这些结果表明,将遥感和气象数据与MaxEnt和SEI模型相结合进行FHB预测具有重要的应用潜力。
Integrating ecological niche and epidemiological models to predict wheat fusarium head blight using remote sensing and meteorological data
Fusarium head blight (FHB) is a major wheat disease worldwide, significantly affecting yield and quality. Disease risk assessment and spatiotemporal dynamic prediction are crucial for effective FHB management and control. Although ecological niche models (ENMs) and epidemiological models (EMs) have been widely applied to assess the potential distribution of diseases and simulate their progression, studies integrating these models with satellite remote sensing and meteorological data for crop disease prediction remain limited. To fill this gap, our study developed an integrated prediction framework based on susceptible-exposed-infected (SEI) model. First, remote sensing data extracted host factors, including wheat spatial distribution, key phenological (KPh) stages defined by Day of Year (DOY), and early physiological changes. This information, along with meteorological features, topographic factors, and sampling coordinates, was utilized to construct an ENM based on Maximum Entropy (MaxEnt) algorithm. MaxEnt evaluation results guided input adjustments, ensuring high AUC output to characterize initial infection levels for SEI model. Next, transition rates in SEI model were determined by the coupling of the parameterized response functions of daily temperature, relative humidity, and DOY for KPh stages to mechanize the EM. The mechanistic model (MM), with optimal parameter values derived from sensitivity analysis and optimization, provided a robust prediction of disease occurrence on the sampling day and enabled spatiotemporal dynamic simulation of wheat FHB. The final MM achieved a coefficient of determination of 0.83, mean absolute error of 0.06, root mean square error of 0.072, and classification F1-score of 0.88. The simulated disease progression curve was consistent with the epidemiological characteristics of FHB, exhibiting an S-shaped pattern. These results suggest that integrating remote sensing and meteorological data with MaxEnt and SEI models for FHB prediction holds significant application potential.
期刊介绍:
Computers and Electronics in Agriculture provides international coverage of advancements in computer hardware, software, electronic instrumentation, and control systems applied to agricultural challenges. Encompassing agronomy, horticulture, forestry, aquaculture, and animal farming, the journal publishes original papers, reviews, and applications notes. It explores the use of computers and electronics in plant or animal agricultural production, covering topics like agricultural soils, water, pests, controlled environments, and waste. The scope extends to on-farm post-harvest operations and relevant technologies, including artificial intelligence, sensors, machine vision, robotics, networking, and simulation modeling. Its companion journal, Smart Agricultural Technology, continues the focus on smart applications in production agriculture.