等位基因特异性电分型诊断转甲状腺蛋白淀粉样变性。

Muhammad Tayyab, Neeru Gandotra, Jianye Sui, Curt Scharfe, Mehdi Javanmard
{"title":"等位基因特异性电分型诊断转甲状腺蛋白淀粉样变性。","authors":"Muhammad Tayyab, Neeru Gandotra, Jianye Sui, Curt Scharfe, Mehdi Javanmard","doi":"10.1038/s44172-025-00385-7","DOIUrl":null,"url":null,"abstract":"<p><p>Clinical genetic testing often takes days to weeks, but rapid, affordable tests during outpatient visits could significantly benefit patients. This is crucial for detecting common, actionable point mutations, such as those linked to hereditary transthyretin (TTR) amyloidosis, which is often underdiagnosed in individuals of West African ancestry with congestive heart failure. Here we developed a method for detecting known DNA variants using allele-specific polymerase chain reaction (ASPCR) and electrical impedance. Oligonucleotide primers were designed to selectively amplify the ancestral and variant allele of TTR c.424G>A (p.Val142Ile). PCR products were detected in solution using passive-flow microfluidic impedance cytometry across multiple excitation frequencies. Impedance responses correlated with DNA concentration, allowing for the calculation of a robust DNA quantification score. TTR V142I genotypes from six patients (four heterozygous, two wildtype) matched results from gel electrophoresis and sequencing. Future improvements will focus on reducing DNA input requirements and enabling multiplex variant detection.</p>","PeriodicalId":72644,"journal":{"name":"Communications engineering","volume":"4 1","pages":"47"},"PeriodicalIF":0.0000,"publicationDate":"2025-03-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11906782/pdf/","citationCount":"0","resultStr":"{\"title\":\"Allele-specific electrical genotyping for diagnosis of transthyretin amyloidosis.\",\"authors\":\"Muhammad Tayyab, Neeru Gandotra, Jianye Sui, Curt Scharfe, Mehdi Javanmard\",\"doi\":\"10.1038/s44172-025-00385-7\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p>Clinical genetic testing often takes days to weeks, but rapid, affordable tests during outpatient visits could significantly benefit patients. This is crucial for detecting common, actionable point mutations, such as those linked to hereditary transthyretin (TTR) amyloidosis, which is often underdiagnosed in individuals of West African ancestry with congestive heart failure. Here we developed a method for detecting known DNA variants using allele-specific polymerase chain reaction (ASPCR) and electrical impedance. Oligonucleotide primers were designed to selectively amplify the ancestral and variant allele of TTR c.424G>A (p.Val142Ile). PCR products were detected in solution using passive-flow microfluidic impedance cytometry across multiple excitation frequencies. Impedance responses correlated with DNA concentration, allowing for the calculation of a robust DNA quantification score. TTR V142I genotypes from six patients (four heterozygous, two wildtype) matched results from gel electrophoresis and sequencing. Future improvements will focus on reducing DNA input requirements and enabling multiplex variant detection.</p>\",\"PeriodicalId\":72644,\"journal\":{\"name\":\"Communications engineering\",\"volume\":\"4 1\",\"pages\":\"47\"},\"PeriodicalIF\":0.0000,\"publicationDate\":\"2025-03-13\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11906782/pdf/\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Communications engineering\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://doi.org/10.1038/s44172-025-00385-7\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"\",\"JCRName\":\"\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Communications engineering","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.1038/s44172-025-00385-7","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}
引用次数: 0

摘要

临床基因检测通常需要几天到几周的时间,但在门诊就诊期间进行快速、负担得起的检测可以显著地使患者受益。这对于检测常见的、可操作的点突变至关重要,例如那些与遗传性甲状腺素转运蛋白(TTR)淀粉样变有关的突变,这在患有充血性心力衰竭的西非血统的个体中经常被误诊。在这里,我们开发了一种利用等位基因特异性聚合酶链反应(ASPCR)和电阻抗检测已知DNA变异的方法。设计寡核苷酸引物,选择性扩增TTR c.424G>A (p.Val142Ile)的祖先等位基因和变异等位基因。PCR产物在溶液中采用多激励频率的被动流微流控阻抗细胞术检测。阻抗反应与DNA浓度相关,从而可以计算出可靠的DNA定量评分。6例患者的TTR V142I基因型(杂合型4例,野生型2例)凝胶电泳和测序结果吻合。未来的改进将集中在减少DNA输入要求和实现多路变异检测上。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Allele-specific electrical genotyping for diagnosis of transthyretin amyloidosis.

Clinical genetic testing often takes days to weeks, but rapid, affordable tests during outpatient visits could significantly benefit patients. This is crucial for detecting common, actionable point mutations, such as those linked to hereditary transthyretin (TTR) amyloidosis, which is often underdiagnosed in individuals of West African ancestry with congestive heart failure. Here we developed a method for detecting known DNA variants using allele-specific polymerase chain reaction (ASPCR) and electrical impedance. Oligonucleotide primers were designed to selectively amplify the ancestral and variant allele of TTR c.424G>A (p.Val142Ile). PCR products were detected in solution using passive-flow microfluidic impedance cytometry across multiple excitation frequencies. Impedance responses correlated with DNA concentration, allowing for the calculation of a robust DNA quantification score. TTR V142I genotypes from six patients (four heterozygous, two wildtype) matched results from gel electrophoresis and sequencing. Future improvements will focus on reducing DNA input requirements and enabling multiplex variant detection.

求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
自引率
0.00%
发文量
0
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:604180095
Book学术官方微信