离散环境下分子在基态和激发态相互作用能的计算方法——以水中尿嘧啶为例

IF 5.5 1区 化学 Q2 CHEMISTRY, PHYSICAL
Claudio Amovilli*,  and , Franca Maria Floris*, 
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引用次数: 0

摘要

在这项工作中,我们提出了一种方法,能够计算一个感兴趣的系统,在基态或激发态,与代表环境的任意数量的水分子的相互作用能。作为测试用例,我们服用尿嘧啶。我们考虑了包含1、12、24、26和37个水分子的5个簇。该方法是朝着确定分子之间相互作用能的更一般方法迈出的第一步,在高水平的理论上进行处理,复杂的分子环境可以用显式溶剂模型来描述。在变分量子蒙特卡罗(QMC)水平上对尿嘧啶的基态和激发态进行了自由空间优化。通过这种方式,我们对用于计算与环境相互作用能量的所有贡献的电子构型进行了采样。在扩散蒙特卡罗(DMC)水平上计算了基态激发能。关于尿嘧啶在水中n→π*和π→π*垂直跃迁的溶剂化变色效应,数值结果与已有文献数据一致。我们的方法提供了由泡利排斥、静电、极化和色散相互作用引起的特定贡献。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Method to Compute the Interaction Energy of a Molecule in Ground and Excited States with a Discrete Environment: The Case of Uracil in Water

In this work, we present a method that is able to compute the interaction energy of a system of interest, in the ground or excited state, with an arbitrary number of water molecules representing the environment. As a test case, we take uracil. We considered five clusters containing 1, 12, 24, 26, and 37 water molecules. The method is a first step toward a more general approach to determining the interaction energy between a molecule, treated at a high level of theory, and a complex molecular environment that can be described as an explicit solvent model. Ground and excited electronic states of uracil were optimized in free space at the variational quantum Monte Carlo (QMC) level. In this way, we sampled electronic configurations that are used to compute all the contributions to the interaction energy with the environment. Excitation energies from the ground state were computed at the diffusion Monte Carlo (DMC) level. Numerical results are in agreement with available literature data on the solvatochromic effect on the n → π* and π → π* vertical transitions of uracil in water. Our method provides specific contributions arising from Pauli repulsion, electrostatic, polarization, and dispersion interactions.

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来源期刊
Journal of Chemical Theory and Computation
Journal of Chemical Theory and Computation 化学-物理:原子、分子和化学物理
CiteScore
9.90
自引率
16.40%
发文量
568
审稿时长
1 months
期刊介绍: The Journal of Chemical Theory and Computation invites new and original contributions with the understanding that, if accepted, they will not be published elsewhere. Papers reporting new theories, methodology, and/or important applications in quantum electronic structure, molecular dynamics, and statistical mechanics are appropriate for submission to this Journal. Specific topics include advances in or applications of ab initio quantum mechanics, density functional theory, design and properties of new materials, surface science, Monte Carlo simulations, solvation models, QM/MM calculations, biomolecular structure prediction, and molecular dynamics in the broadest sense including gas-phase dynamics, ab initio dynamics, biomolecular dynamics, and protein folding. The Journal does not consider papers that are straightforward applications of known methods including DFT and molecular dynamics. The Journal favors submissions that include advances in theory or methodology with applications to compelling problems.
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