{"title":"离散环境下分子在基态和激发态相互作用能的计算方法——以水中尿嘧啶为例","authors":"Claudio Amovilli*, and , Franca Maria Floris*, ","doi":"10.1021/acs.jctc.4c0137510.1021/acs.jctc.4c01375","DOIUrl":null,"url":null,"abstract":"<p >In this work, we present a method that is able to compute the interaction energy of a system of interest, in the ground or excited state, with an arbitrary number of water molecules representing the environment. As a test case, we take uracil. We considered five clusters containing 1, 12, 24, 26, and 37 water molecules. The method is a first step toward a more general approach to determining the interaction energy between a molecule, treated at a high level of theory, and a complex molecular environment that can be described as an explicit solvent model. Ground and excited electronic states of uracil were optimized in free space at the variational quantum Monte Carlo (QMC) level. In this way, we sampled electronic configurations that are used to compute all the contributions to the interaction energy with the environment. Excitation energies from the ground state were computed at the diffusion Monte Carlo (DMC) level. Numerical results are in agreement with available literature data on the solvatochromic effect on the <i>n</i> → π* and π → π* vertical transitions of uracil in water. Our method provides specific contributions arising from Pauli repulsion, electrostatic, polarization, and dispersion interactions.</p>","PeriodicalId":45,"journal":{"name":"Journal of Chemical Theory and Computation","volume":"21 5","pages":"2272–2280 2272–2280"},"PeriodicalIF":5.5000,"publicationDate":"2025-02-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://pubs.acs.org/doi/epdf/10.1021/acs.jctc.4c01375","citationCount":"0","resultStr":"{\"title\":\"Method to Compute the Interaction Energy of a Molecule in Ground and Excited States with a Discrete Environment: The Case of Uracil in Water\",\"authors\":\"Claudio Amovilli*, and , Franca Maria Floris*, \",\"doi\":\"10.1021/acs.jctc.4c0137510.1021/acs.jctc.4c01375\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p >In this work, we present a method that is able to compute the interaction energy of a system of interest, in the ground or excited state, with an arbitrary number of water molecules representing the environment. As a test case, we take uracil. We considered five clusters containing 1, 12, 24, 26, and 37 water molecules. The method is a first step toward a more general approach to determining the interaction energy between a molecule, treated at a high level of theory, and a complex molecular environment that can be described as an explicit solvent model. Ground and excited electronic states of uracil were optimized in free space at the variational quantum Monte Carlo (QMC) level. In this way, we sampled electronic configurations that are used to compute all the contributions to the interaction energy with the environment. Excitation energies from the ground state were computed at the diffusion Monte Carlo (DMC) level. Numerical results are in agreement with available literature data on the solvatochromic effect on the <i>n</i> → π* and π → π* vertical transitions of uracil in water. Our method provides specific contributions arising from Pauli repulsion, electrostatic, polarization, and dispersion interactions.</p>\",\"PeriodicalId\":45,\"journal\":{\"name\":\"Journal of Chemical Theory and Computation\",\"volume\":\"21 5\",\"pages\":\"2272–2280 2272–2280\"},\"PeriodicalIF\":5.5000,\"publicationDate\":\"2025-02-28\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://pubs.acs.org/doi/epdf/10.1021/acs.jctc.4c01375\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Journal of Chemical Theory and Computation\",\"FirstCategoryId\":\"92\",\"ListUrlMain\":\"https://pubs.acs.org/doi/10.1021/acs.jctc.4c01375\",\"RegionNum\":1,\"RegionCategory\":\"化学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q2\",\"JCRName\":\"CHEMISTRY, PHYSICAL\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Journal of Chemical Theory and Computation","FirstCategoryId":"92","ListUrlMain":"https://pubs.acs.org/doi/10.1021/acs.jctc.4c01375","RegionNum":1,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"CHEMISTRY, PHYSICAL","Score":null,"Total":0}
Method to Compute the Interaction Energy of a Molecule in Ground and Excited States with a Discrete Environment: The Case of Uracil in Water
In this work, we present a method that is able to compute the interaction energy of a system of interest, in the ground or excited state, with an arbitrary number of water molecules representing the environment. As a test case, we take uracil. We considered five clusters containing 1, 12, 24, 26, and 37 water molecules. The method is a first step toward a more general approach to determining the interaction energy between a molecule, treated at a high level of theory, and a complex molecular environment that can be described as an explicit solvent model. Ground and excited electronic states of uracil were optimized in free space at the variational quantum Monte Carlo (QMC) level. In this way, we sampled electronic configurations that are used to compute all the contributions to the interaction energy with the environment. Excitation energies from the ground state were computed at the diffusion Monte Carlo (DMC) level. Numerical results are in agreement with available literature data on the solvatochromic effect on the n → π* and π → π* vertical transitions of uracil in water. Our method provides specific contributions arising from Pauli repulsion, electrostatic, polarization, and dispersion interactions.
期刊介绍:
The Journal of Chemical Theory and Computation invites new and original contributions with the understanding that, if accepted, they will not be published elsewhere. Papers reporting new theories, methodology, and/or important applications in quantum electronic structure, molecular dynamics, and statistical mechanics are appropriate for submission to this Journal. Specific topics include advances in or applications of ab initio quantum mechanics, density functional theory, design and properties of new materials, surface science, Monte Carlo simulations, solvation models, QM/MM calculations, biomolecular structure prediction, and molecular dynamics in the broadest sense including gas-phase dynamics, ab initio dynamics, biomolecular dynamics, and protein folding. The Journal does not consider papers that are straightforward applications of known methods including DFT and molecular dynamics. The Journal favors submissions that include advances in theory or methodology with applications to compelling problems.