利用物理信息神经网络模拟自由边界细胞迁移模型

IF 3.3 2区 医学 Q2 ENGINEERING, BIOMEDICAL
Sanchita Malla , Dietmar Oelz , Sitikantha Roy
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引用次数: 0

摘要

计算建模有助于理解单细胞迁移的复杂性,它为迁移机制背后的生理过程提供了重要的见解。本研究建立了具有移动边界的迁移细胞内一维肌动球蛋白流动的计算模型。该模型通过一个耦合非线性偏微分方程系统结合了肌动蛋白聚合、底物粘附和肌动球蛋白动力学的复杂相互作用。考虑到求解具有可变形域的动态模型的计算成本,一个物理信息的神经网络被设计用来理解细胞内肌动蛋白流动和肌动蛋白浓度的动态行为以及未知的移动边界。数值结果证明了该模型描述细胞内生物和物理过程之间复杂相互作用的能力,这些结果在定性上与文献中可用的实验和计算数据一致。本研究展示了深度学习方法在模拟具有移动边界的具有挑战性的生物物理问题中的应用。该模型不需要用于训练的合成数据,并且准确地反映了细胞迁移的复杂生物物理学。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

Simulation of a Free Boundary Cell Migration Model through Physics Informed Neural Networks

Simulation of a Free Boundary Cell Migration Model through Physics Informed Neural Networks
Understanding the complexities of single-cell migration is facilitated by computational modeling, which provides important insights into the physiological processes that underlie migration mechanisms. This study developed a computational model for one-dimensional actomyosin flow in a migrating cell with moving boundaries. The model incorporates the complex interplay of actin polymerization, substrate adhesion, and actomyosin dynamics through a system of coupled nonlinear partial differential equations. A physics-informed neural network is designed to understand the dynamic behavior of actin flow and actin concentration within the cell along with the unknown moving boundaries, taking into account the computational cost of solving a dynamic model with a deformable domain. The model’s capacity to depict the complex interaction between biological and physical processes within the cell is demonstrated by the numerical results, which qualitatively agree with experimental and computational data available in the literature. This study demonstrates the application of a deep learning method to simulate a challenging biophysical problem with moving boundaries. The model does not require synthetic data for training and accurately reflects the intricate biophysics of cell migration.
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来源期刊
Journal of the Mechanical Behavior of Biomedical Materials
Journal of the Mechanical Behavior of Biomedical Materials 工程技术-材料科学:生物材料
CiteScore
7.20
自引率
7.70%
发文量
505
审稿时长
46 days
期刊介绍: The Journal of the Mechanical Behavior of Biomedical Materials is concerned with the mechanical deformation, damage and failure under applied forces, of biological material (at the tissue, cellular and molecular levels) and of biomaterials, i.e. those materials which are designed to mimic or replace biological materials. The primary focus of the journal is the synthesis of materials science, biology, and medical and dental science. Reports of fundamental scientific investigations are welcome, as are articles concerned with the practical application of materials in medical devices. Both experimental and theoretical work is of interest; theoretical papers will normally include comparison of predictions with experimental data, though we recognize that this may not always be appropriate. The journal also publishes technical notes concerned with emerging experimental or theoretical techniques, letters to the editor and, by invitation, review articles and papers describing existing techniques for the benefit of an interdisciplinary readership.
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