Assembly和Daedaleopsissinensis (Polyporaceae,担子菌科)线粒体全基因组的比较分析,有助于了解真菌的进化和生态功能。

IF 5.2 1区 生物学 Q1 MYCOLOGY
Ima Fungus Pub Date : 2025-02-17 eCollection Date: 2025-01-01 DOI:10.3897/imafungus.16.141288
Jin-Xin Ma, Hai-Jiao Li, Can Jin, Hao Wang, Lu-Xin Tang, Jing Si, Bao-Kai Cui
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引用次数: 0

摘要

Daedaleopsissinensis是一种重要的木材腐烂真菌,具有显著的木质纤维素降解能力,在森林生态系统的物质循环和能量流动中起着至关重要的作用。然而,中华白蛉的线粒体基因组尚未被发现。在本研究中,我们组装了中华白蛉线粒体全基因组,并与近缘种进行了比较。线粒体基因组全长69,155 bp, GC含量为25.0%。它包括15个蛋白质编码基因(PCGs)、26个转移RNA基因、2个核糖体RNA基因和1个DNA聚合酶基因(dpo)。在此,我们表征并分析了中华龙虎线粒体基因组中的密码子偏好、PCGs的变异和进化、重复序列、内含子动力学以及RNA编辑事件。此外,利用线粒体基因组数据对中国担子菌与其他86种担子菌进行了系统发育分析。结果表明,d.s confragosa、d.s sinensis、D.nitida和Fomesfomentarius 4种聚类关系密切,具有较高的支持值,表明Daedaleopsis与Fomes之间存在密切的系统发育关系。本研究报道了sinensis线粒体基因组的初始组装和注释,极大地提高了对该真菌的认识。这些结果有助于对木材腐烂真菌线粒体储存库的有限了解,从而为后续真菌进化和生态功能的研究奠定基础。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Assembly and comparative analysis of the complete mitochondrial genome of Daedaleopsissinensis (Polyporaceae, Basidiomycota), contributing to understanding fungal evolution and ecological functions.

Daedaleopsissinensis is a crucial wood-decaying fungus with significant lignocellulose-degrading ability, which plays a vital role in the material cycle and energy flow of forest ecosystems. However, the mitochondrial genome of D.sinensis has not yet been revealed. In the present study, the complete mitochondrial genome of D.sinensis was assembled and compared with related species. The mitochondrial genome spans 69,155 bp and has a GC content of 25.0%. It comprises 15 protein-coding genes (PCGs), 26 transfer RNA genes, two ribosomal RNA genes and one DNA polymerase gene (dpo). Herein, we characterised and analysed the codon preferences, variation and evolution of PCGs, repeats, intron dynamics, as well as RNA editing events in the D.sinensis mitochondrial genome. Further, a phylogenetic analysis of D.sinensis and the other 86 Basidiomycota species was performed using mitochondrial genome data. The results revealed that four species, D.confragosa, D.sinensis, D.nitida and Fomesfomentarius, were grouped in a closely-related cluster with high support values, indicating that a close phylogenetic relationship existed between Daedaleopsis and Fomes. This study reported on the initial assembly and annotation of the mitochondrial genome of D.sinensis, which greatly improved the knowledge of the fungus. These results contribute to the limited understanding of the mitochondrial repository of wood-decaying fungi, thereby laying the foundation for subsequent research on fungal evolution and ecological functions.

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来源期刊
Ima Fungus
Ima Fungus Agricultural and Biological Sciences-Agricultural and Biological Sciences (miscellaneous)
CiteScore
11.00
自引率
3.70%
发文量
18
审稿时长
20 weeks
期刊介绍: The flagship journal of the International Mycological Association. IMA Fungus is an international, peer-reviewed, open-access, full colour, fast-track journal. Papers on any aspect of mycology are considered, and published on-line with final pagination after proofs have been corrected; they are then effectively published under the International Code of Nomenclature for algae, fungi, and plants. The journal strongly supports good practice policies, and requires voucher specimens or cultures to be deposited in a public collection with an online database, DNA sequences in GenBank, alignments in TreeBASE, and validating information on new scientific names, including typifications, to be lodged in MycoBank. News, meeting reports, personalia, research news, correspondence, book news, and information on forthcoming international meetings are included in each issue
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