ParasiteBlitz: BioBlitz概念在寄生虫学中的应用。

IF 1.3 3区 生物学 Q4 PARASITOLOGY
I de Buron, K M Hill-Spanik, S D Atkinson, M P M Vanhove, N Kmentová, S Georgieva, D M Díaz-Morales, M R Kendrick, W A Roumillat, G K Rothman
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引用次数: 0

摘要

生物闪电战(BioBlitz)是对特定地理区域进行快速而深入的调查,汇集专家和非专业人员,评估生物多样性,特别是那些易于在现场观察和识别的大型生物群。这一概念已经在分类学领域流行起来,吸引了全球对增加当地生物多样性知识的兴趣。受该方法成功的启发,我们在一个未开发的地方(美国南卡罗来纳州查尔斯顿的斯通诺保护区)进行了“寄生虫闪电式”研究,以确定其对寄生虫的可行性,其多样性评估在世界范围内基本上被忽视。我们组建了一支由具有互补专业知识的寄生虫学家组成的团队。2023年4月,在12天的时间里(每个栖息地3天),我们对湿地、淡水池塘、咸淡水蓄水池和潮汐溪4个水生栖息地的鱼类和水生无脊椎动物进行了寄生虫筛选,并对沉积物和水进行了环境DNA (eDNA)元条形码采集。我们得到了非寄生虫学家和学生的帮助。有关方法和结果的详细信息在本特别合集的个别论文中提供。传统方法揭示了7个主要后生动物寄生虫分类群中约100种的存在,而eDNA调查产生了超过1000个扩增子序列变异,其中大多数序列在GenBank中无法匹配,结果在闪电战之后的一年时间内,只有少数物种被确定为命名物种。讨论了ParasiteBlitz的局限性和挑战,我们的研究结果支持这种方法可以有效地在未充分研究的环境中快速发现寄生虫组合的尺寸,并有助于寄生虫学知识。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
ParasiteBlitz: Adaptation of the BioBlitz concept to parasitology.

A BioBlitz is a rapid and intensive survey of a specific geographic area that brings together experts and often lay participants to assess biodiversity, typically of macrobiota that are easily observed and identifiable on-site. This concept has become popular across taxonomic fields, attracting interest globally to increase knowledge of local biodiversity. Inspired by the success of the approach, we undertook a 'ParasiteBlitz' at an unexplored locality (Stono Preserve, Charleston, South Carolina, USA) to determine its feasibility for parasites, whose assessment of diversity is largely neglected worldwide. We assembled a team of parasitologists with complementary expertise. Over 12 days (3 days in each habitat) in April 2023, we intensively screened fishes and aquatic invertebrates for parasites, and sampled sediment and water for environmental DNA (eDNA) metabarcoding from four aquatic habitats: wetland, freshwater pond, brackish impoundment, and tidal creek. We incorporated assistance from non-parasitologists and students. Details on methodologies and results are provided in individual papers in this Special Collection. Traditional methods revealed the presence of ca. 100 species of seven major metazoan parasite taxa, and the eDNA survey yielded over 1,000 amplicon sequence variants identified as parasites, most with sequences unmatched in GenBank, and resulting in only a few species identified as named species in the one-year post-Blitz timeframe we imposed upon ourselves for identification. Limitations and challenges of the ParasiteBlitz are discussed, and our results support that this approach can be effective for rapid discovery of the dimensions of parasite assemblages in an understudied environment and contribute to parasitology knowledge.

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来源期刊
Journal of Helminthology
Journal of Helminthology 生物-动物学
CiteScore
2.80
自引率
12.50%
发文量
127
审稿时长
3 months
期刊介绍: Journal of Helminthology publishes original papers and review articles on all aspects of pure and applied helminthology, particularly those helminth parasites of environmental health, medical or veterinary importance. Research papers on helminths in wildlife hosts, including plant and insect parasites, are also published along with taxonomic papers contributing to the systematics of a group. The journal will be of interest to academics and researchers involved in the fields of human and veterinary parasitology, public health, microbiology, ecology and biochemistry.
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