从潮间带沉积物中分离出的一种dna水解细菌。

IF 2 3区 生物学 Q4 MICROBIOLOGY
Jia-Xuan Wang, Jing Wang, Ning-Hua Liu, Qi-Long Qin, Ping-Yi Li, Xiao-Yan Song, Xiu-Lan Chen, Yu-Zhong Zhang, Xi-Ying Zhang
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引用次数: 0

摘要

从青岛敖山湾潮间带沉积物中分离到一株革兰氏染色阴性、黄色、无鞭毛、滑行运动、需氧棒状细菌SM2212T。菌株在5 ~ 35℃、0.5 ~ 5.5% NaCl (w/v)条件下生长。它能将硝酸盐还原为亚硝酸盐,水解淀粉、明胶和DNA。基于16S rRNA基因和单拷贝基因的系统发育树分析结果表明,菌株SM2212T属于黄杆菌科Christiangramia属,其16S rRNA基因序列与青霉属(Christiangramia echinicola)型菌株的相似性最高(97.1%),与该属其他已知物种的16S rRNA基因序列相似性为962 ~ 97.0%。主要的细胞脂肪酸为特征3 (C16:1 ω 7cr和/或C16:1 ω 6cr), iso-C15:0, iso-C17: 03-OH,特征9 (iso-C17:1 ω 9cr和/或10-甲基C16:0)和C16:0。主要极性脂质为磷脂酰乙醇胺和一种未识别的脂质。菌株SM2212T基因组DNA G+C含量为37.0 mol%。菌株SM2212T与已知近缘种型菌株的数字DNA-DNA杂交和平均核苷酸同源值分别低于22.2%和79.7%。基于本研究的多相分类分析,认为菌株SM2212T代表了Christiangramia属的一个新种,并建议将其命名为Christiangramia sediminicola。型应变为SM2212T (=KCTC 92980T=MCCC 1K07684T)。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Christiangramia sediminicola sp. nov., a DNA-hydrolysing bacterium isolated from intertidal sediment.

A Gram-stain-negative, yellow-pigmented, non-flagellated, motile by gliding, aerobic and rod-shaped bacterial strain, designated SM2212T, was isolated from intertidal sediment of Aoshan Bay in Qingdao, China. The strain grew at 5-35 °C and with 0.5-5.5% NaCl (w/v). It was able to reduce nitrate to nitrite and hydrolyse starch, gelatin and DNA. The phylogenetic trees based on the 16S rRNA genes and single-copy genes showed that strain SM2212T belonged to the genus Christiangramia within the family Flavobacteriaceae, sharing the highest 16S rRNA gene sequence similarity with the type strain of Christiangramia echinicola (97.1%) and 96.2-97.0% 16S rRNA gene sequence similarity with those of other known species in the genus. The major cellular fatty acids were summed feature 3 (C16:1 ω7с and/or C16:1 ω6с), iso-C15:0, iso-C17: 03-OH, summed feature 9 (iso-C17:1  ω9c and/or 10-methyl C16:0) and C16:0. The major polar lipids were phosphatidylethanolamine and an unidentified lipid. The genomic DNA G+C content of strain SM2212T was 37.0 mol%. The digital DNA-DNA hybridization and average nucleotide identity values between strain SM2212T and type strains of closely related known Christiangramia species were below 22.2 and 79.7%, respectively. Based on the polyphasic taxonomic analysis in this study, strain SM2212T is considered to represent a novel species in the genus Christiangramia, for which the name Christiangramia sediminicola is proposed. The type strain is SM2212T (=KCTC 92980T=MCCC 1K07684T).

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来源期刊
CiteScore
5.20
自引率
21.40%
发文量
426
审稿时长
1 months
期刊介绍: Published by the Microbiology Society and owned by the International Committee on Systematics of Prokaryotes (ICSP), a committee of the Bacteriology and Applied Microbiology Division of the International Union of Microbiological Societies, International Journal of Systematic and Evolutionary Microbiology is the leading forum for the publication of novel microbial taxa and the ICSP’s official journal of record for prokaryotic names. The journal welcomes high-quality research on all aspects of microbial evolution, phylogenetics and systematics, encouraging submissions on all prokaryotes, yeasts, microfungi, protozoa and microalgae across the full breadth of systematics including: Identification, characterisation and culture preservation Microbial evolution and biodiversity Molecular environmental work with strong taxonomic or evolutionary content Nomenclature Taxonomy and phylogenetics.
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