PGK1在食管鳞状细胞癌中预后预测、免疫调节功能的泛癌研究及实验验证

IF 3.9 4区 生物学 Q1 GENETICS & HEREDITY
Junru Chen, Xun Wu, Hongtao Luo, Dandan Wang, Meng Dong, Yuhang Wang, Yuhong Ou, Shilong Sun, Zhiqiang Liu, Qiuning Zhang, Quanlin Guan
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引用次数: 0

摘要

磷酸甘油酸激酶1 (PGK1)是糖酵解途径中的关键酶,通过细胞代谢、血管生成、增殖和上皮间质转化(EMT)等多种生物活动促进肿瘤进展。尽管PGK1在特定的癌症类型中得到了深入的研究,但其在泛癌症背景下的总体意义仍未得到充分探讨。本研究利用Cancer Genome Atlas (TCGA)、Genotype-Tissue Expression (GTEx)、Tumor Immune Estimation Resource (TIMER2.0)、cbiopportal等多种公共数据库资源,分析了PGK1在33种不同癌症类型中的基因表达、基因改变特征、预后价值、亚细胞定位、生物学功能、免疫特性和药物敏感性。使用R软件将这些数据可视化。此外,我们还利用5-乙基-2 ' -脱氧尿苷(EdU)掺入法、CCK-8法、Annexin V-FITC/PI法、迁移法和侵袭法,在体外研究了PGK1对食管鳞状细胞癌(ESCC)细胞增殖、凋亡、迁移和侵袭的影响。研究结果表明,PGK1在各种癌症类型中表达上调,并与不良预后密切相关。在功能富集分析方面,PGK1主要在糖酵解、缺氧、EMT和免疫相关途径中发挥作用。此外,PGK1在肿瘤微环境中的免疫细胞和恶性细胞中高度表达。值得注意的是,PGK1的表达在不同激活状态的免疫细胞中有显著差异。体外实验结果显示,PGK1在ESCC细胞中显著上调,其下调可显著抑制细胞增殖、迁移和侵袭,同时增加细胞凋亡;相反,过表达促进细胞增殖、迁移和侵袭,同时减少细胞凋亡。PGK1可以作为多种癌症的预后生物标志物和治疗靶点,可能是免疫学研究的一个有希望的焦点。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Pan-cancer investigation regarding the prognostic predictive and immunological regulation functions of PGK1 and experimental validation in esophageal squamous cell carcinoma

Phosphoglycerate kinase 1 (PGK1), a pivotal enzyme in the glycolysis pathway, contributes to tumor progression through diverse biological activities like cell metabolism, angiogenesis, proliferation, and epithelial-mesenchymal transformation (EMT). Although PGK1 has been intensively researched in specific cancer types, its overarching significance in pan-cancer contexts remains underexplored. This study leveraged various public database resources, including the Cancer Genome Atlas (TCGA), Genotype-Tissue Expression (GTEx), Tumor Immune Estimation Resource (TIMER2.0), and cBioPortal, to analyze the gene expression, gene alteration characteristics, prognostic value, subcellular localization, biological function, immune characteristics, and drug sensitivity of PGK1 in 33 different cancer types. R software was used to visualize these data. Furthermore, the effects of PGK1 on the proliferation, apoptosis, migration, and invasion of esophageal squamous cell carcinoma (ESCC) cells were also examined in vitro using 5-ethynyl-2′-deoxyuridine (EdU) incorporation assay, CCK-8 assay, Annexin V-FITC/PI assay, migration assay, and invasion assay. The findings suggested that PGK1 is upregulated in various cancer types and closely associated with poor prognosis. In terms of functional enrichment analysis, PGK1 primarily plays a role in glycolysis, hypoxia, EMT, and immune-related pathways. Furthermore, PGK1 is highly expressed in immune and malignant cells in the tumor microenvironment. Notably, PGK1 expression varied significantly among immune cells with distinct activation states. The results of experiments in vitro showed that PGK1 was significantly upregulated in ESCC cells, and its knockdown led to significant inhibition of proliferation, migration, and invasion while increasing cell apoptosis; conversely, overexpression promoted proliferation, migration, and invasion while reducing apoptosis. PGK1 can serve as a prognostic biomarker and therapy target for various cancers, and it may be a promising focal point of immunological studies.

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来源期刊
CiteScore
3.50
自引率
3.40%
发文量
92
审稿时长
2 months
期刊介绍: Functional & Integrative Genomics is devoted to large-scale studies of genomes and their functions, including systems analyses of biological processes. The journal will provide the research community an integrated platform where researchers can share, review and discuss their findings on important biological questions that will ultimately enable us to answer the fundamental question: How do genomes work?
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