通过转录组学和代谢组学鉴定KLF14是肝脏再生的潜在调节因子。

IF 3.9 2区 综合性期刊 Q1 MULTIDISCIPLINARY SCIENCES
Chang Liu, Dalong Zhu, Junlong Xue, Alimu Tulahong, Tuerganaili Aji
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引用次数: 0

摘要

肝再生是一个复杂的过程,对于部分肝切除术(PH)或离体肝切除和自体移植(ELRA)后的恢复至关重要。本研究旨在通过分析3例接受PH和ELRA治疗的肺泡包虫病患者外周血样本,探讨肝再生的分子机制。在术前、术后第1天、术后第5天三个时间点采集3例PH患者和3例ELRA患者的外周血,以及3名健康对照。转录组学分析采用RNA测序鉴定差异表达基因(DEGs),代谢组学分析采用非靶向液相色谱-质谱法(LC-MS)进行。通过实时定量聚合酶链反应(RT-qPCR)和Western blot分析验证了关键发现。转录组学分析显示,与术前相比,ELRA组术后第1天的转录组温度为3574℃,术后第5天的转录组温度为3269℃。PH组术后第1天与术前相比,共检测到1619个deg;术后第5天与第1天相比,共检测到896个deg。其中,两组共有36个共同基因,主要富集于代谢途径。整合常见基因、共表达网络分析和Mfuzz聚类发现KLF14是一个与肝脏再生过程相关的基因,其与PI3K-AKT通路相关。代谢组学分析强调了与脂质、氨基酸和能量代谢相关的差异表达代谢物。这项研究为肝脏再生的分子调控提供了新的见解,确定了KLF14和相关的代谢过程。这些发现为加强肝脏修复提供了潜在的治疗靶点。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Identifying KLF14 as a potential regulatory factor in liver regeneration trough transcriptomic and metabolomic.

Liver regeneration is a complex process crucial for recovery after partial hepatectomy (PH) or ex-vivo liver resection and autotransplantation (ELRA). This study aimed to explore the molecular mechanisms involved in liver regeneration by analyzing peripheral blood samples from three patients with alveolar echinococcosis undergoing PH and ELRA. Peripheral blood samples were collected from three patients undergoing PH and three patients undergoing ELRA at three time points: pre-operation, postoperative day 1, and postoperative day 5, as well as three healthy controls. Transcriptomic analysis was performed to identify differentially expressed genes (DEGs) using RNA sequencing, while metabolomic analysis was conducted using untargeted liquid chromatography-mass spectrometry (LC-MS). Key findings were validated through real-time quantitative polymerase chain reaction (RT-qPCR) and Western blot analysis. Transcriptomic analysis revealed 3574 DEGs on post-operative day 1 compared to pre-operation in the ELRA group, and 3269 DEGs on post-operative day 5 compared to day 1. In the PH group, 1619 DEGs were identified on post-operative day 1 compared to pre-operation, and 896 DEGs were found on post-operative day 5 compared to day 1. Among these, 36 common genes were shared between both groups, primarily enriched in metabolic pathways. Integration of common genes, co-expression network analysis and Mfuzz clustering identified KLF14 as a gene correlated with liver regeneration processes, with its association with the PI3K-AKT pathway. Metabolomic analysis highlighted differentially expressed metabolites associated with lipid, amino acid, and energy metabolism. This study provides new insights into the molecular regulation of liver regeneration, identifying KLF14 and associated metabolic processes. These findings offer potential therapeutic targets for enhancing liver repair.

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来源期刊
Scientific Reports
Scientific Reports Natural Science Disciplines-
CiteScore
7.50
自引率
4.30%
发文量
19567
审稿时长
3.9 months
期刊介绍: We publish original research from all areas of the natural sciences, psychology, medicine and engineering. You can learn more about what we publish by browsing our specific scientific subject areas below or explore Scientific Reports by browsing all articles and collections. Scientific Reports has a 2-year impact factor: 4.380 (2021), and is the 6th most-cited journal in the world, with more than 540,000 citations in 2020 (Clarivate Analytics, 2021). •Engineering Engineering covers all aspects of engineering, technology, and applied science. It plays a crucial role in the development of technologies to address some of the world''s biggest challenges, helping to save lives and improve the way we live. •Physical sciences Physical sciences are those academic disciplines that aim to uncover the underlying laws of nature — often written in the language of mathematics. It is a collective term for areas of study including astronomy, chemistry, materials science and physics. •Earth and environmental sciences Earth and environmental sciences cover all aspects of Earth and planetary science and broadly encompass solid Earth processes, surface and atmospheric dynamics, Earth system history, climate and climate change, marine and freshwater systems, and ecology. It also considers the interactions between humans and these systems. •Biological sciences Biological sciences encompass all the divisions of natural sciences examining various aspects of vital processes. The concept includes anatomy, physiology, cell biology, biochemistry and biophysics, and covers all organisms from microorganisms, animals to plants. •Health sciences The health sciences study health, disease and healthcare. This field of study aims to develop knowledge, interventions and technology for use in healthcare to improve the treatment of patients.
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