Daniel J Phan, Martin Were, Jörn-Hendrik Weitkamp, Audrey K Bowden
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No prior knowledge of the OCT system parameters or assumed form for the confocal and fall-off functions is needed.</p><p><strong>Results: </strong>The method was derived and validated with simulations and OCT images of a phantom, a biological sample, and human retina. Improvement over the Ratio Fit method was demonstrated.</p><p><strong>Conclusions: </strong>The improvement in the extraction of the combined confocal and fall-off effects by this method should lead to improved medical diagnosis through more accurate attenuation coefficient calculations. The method enables future applications of OCT where precise removal of all depth-dependent effects on OCT images is critical.</p>","PeriodicalId":15264,"journal":{"name":"Journal of Biomedical Optics","volume":"30 2","pages":"025003"},"PeriodicalIF":3.0000,"publicationDate":"2025-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11868661/pdf/","citationCount":"0","resultStr":"{\"title\":\"Basis function model to extract the combined confocal and fall-off function from multiple optical coherence tomography A-scans.\",\"authors\":\"Daniel J Phan, Martin Were, Jörn-Hendrik Weitkamp, Audrey K Bowden\",\"doi\":\"10.1117/1.JBO.30.2.025003\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><strong>Significance: </strong>Many derivatives of optical coherence tomography (OCT) rely on the depth-dependent information of the sample in the image. System depth-dependent effects, such as the confocal effect and the sensitivity fall-off, should be corrected to improve the accuracy of the images and information derived from them.</p><p><strong>Aim: </strong>We developed a new single-shot method to extract the combined confocal and fall-off functions and remove system-generated depth-dependent effects from OCT images.</p><p><strong>Approach: </strong>The combined function is modeled as a linear combination of basis functions whose coefficients are found from two or more A-scans (or B-scans) of a sample that are vertically shifted within the imaging range. No prior knowledge of the OCT system parameters or assumed form for the confocal and fall-off functions is needed.</p><p><strong>Results: </strong>The method was derived and validated with simulations and OCT images of a phantom, a biological sample, and human retina. Improvement over the Ratio Fit method was demonstrated.</p><p><strong>Conclusions: </strong>The improvement in the extraction of the combined confocal and fall-off effects by this method should lead to improved medical diagnosis through more accurate attenuation coefficient calculations. The method enables future applications of OCT where precise removal of all depth-dependent effects on OCT images is critical.</p>\",\"PeriodicalId\":15264,\"journal\":{\"name\":\"Journal of Biomedical Optics\",\"volume\":\"30 2\",\"pages\":\"025003\"},\"PeriodicalIF\":3.0000,\"publicationDate\":\"2025-02-01\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11868661/pdf/\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Journal of Biomedical Optics\",\"FirstCategoryId\":\"3\",\"ListUrlMain\":\"https://doi.org/10.1117/1.JBO.30.2.025003\",\"RegionNum\":3,\"RegionCategory\":\"医学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"2025/2/26 0:00:00\",\"PubModel\":\"Epub\",\"JCR\":\"Q2\",\"JCRName\":\"BIOCHEMICAL RESEARCH METHODS\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Journal of Biomedical Optics","FirstCategoryId":"3","ListUrlMain":"https://doi.org/10.1117/1.JBO.30.2.025003","RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"2025/2/26 0:00:00","PubModel":"Epub","JCR":"Q2","JCRName":"BIOCHEMICAL RESEARCH METHODS","Score":null,"Total":0}
Basis function model to extract the combined confocal and fall-off function from multiple optical coherence tomography A-scans.
Significance: Many derivatives of optical coherence tomography (OCT) rely on the depth-dependent information of the sample in the image. System depth-dependent effects, such as the confocal effect and the sensitivity fall-off, should be corrected to improve the accuracy of the images and information derived from them.
Aim: We developed a new single-shot method to extract the combined confocal and fall-off functions and remove system-generated depth-dependent effects from OCT images.
Approach: The combined function is modeled as a linear combination of basis functions whose coefficients are found from two or more A-scans (or B-scans) of a sample that are vertically shifted within the imaging range. No prior knowledge of the OCT system parameters or assumed form for the confocal and fall-off functions is needed.
Results: The method was derived and validated with simulations and OCT images of a phantom, a biological sample, and human retina. Improvement over the Ratio Fit method was demonstrated.
Conclusions: The improvement in the extraction of the combined confocal and fall-off effects by this method should lead to improved medical diagnosis through more accurate attenuation coefficient calculations. The method enables future applications of OCT where precise removal of all depth-dependent effects on OCT images is critical.
期刊介绍:
The Journal of Biomedical Optics publishes peer-reviewed papers on the use of modern optical technology for improved health care and biomedical research.