PROCEED v6.1:表型变化率进化和生态数据库

IF 4.4 2区 环境科学与生态学 Q1 ECOLOGY
Ecology Pub Date : 2025-03-03 DOI:10.1002/ecy.70009
Lucas D. Gorné, Andrew P. Hendry, Fanie Pelletier, Sarah Sanderson, Cristian Correa, Carlos Arias, Marc-Olivier Beausoleil, Maryse Boisjoly, Erika Crispo, Daniel Berner, Luis F. De León, Joseph D. DiBattista, Grant E. Haines, Benjamin C. Haller, Michael T. Kinnison, Shahin Muttalib, Ann E. McKellar, Rose E. O'Dea, Winer Daniel Reyes-Corral, Yanny Ritchot, Krista B. Oke, Zachary T. Wood, Thomas Farrugia, Kiyoko M. Gotanda
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引用次数: 0

摘要

种群必须不断对环境变化作出反应,否则就有灭绝的危险。这些反应可以用表型变化率来衡量,这使得研究人员能够预测它们当代的进化反应。1999年,建立了野生种群表型变化率数据库。从那时起,研究人员使用(并扩展)该数据库来检查表型反应作为研究系统特征(即,经历特定驱动因素或干扰的特定物种的种群或种群集),测量特征和方法方法的函数。因此,PROCEED(表型变化率进化和生态数据库)是一个正在进行的表型变化率汇编,通常以霍尔丹和达尔文计算,发表在同行评审的文献中(但也包括论文和技术报告中的数据)。该数据库中的研究测量了定量(连续或离散)特征的种内变化,并报告了从环境新奇开始所经过的时间,或参考了其他来源报告的历史或生物事件(例如,矿山开放或有充分记录的生物入侵)。纳入的研究要么随时间跟踪单一人群(异时设计),要么比较两个或更多在已知时间分化的人群(共时设计)。一些纳入的研究解释了该领域的总体表型变异性(即表型研究),而另一些采用共同花园或其他定量遗传方法来解释表型变化的可遗传成分(即遗传研究)。PROCEED包括自然和实验条件下的系统,前提是繁殖不受操纵(即排除人工选择实验)。在所纳入的实验系统中,对焦点群体的环境进行了操纵(例如,草食排斥实验,其中草食的类型和负荷被操纵),但研究没有故意选择研究群体的性状值(例如,植物高度)。PROCEED不包括表型改变可能是由于种间杂交、多倍体或其他染色体改变引起的系统。这里,我们介绍最新更新的PROCEED (Version 6.1)。这个新的,策划的版本有9263记录(n)从326项研究,1801个系统和428个物种中整理出来。该数据库包括哺乳动物(n = 686)、鸟类(n = 1475)、爬行动物(n = 96)、两栖动物(n = 23)、鱼类(n = 3671)、无脊椎动物(n = 1141,主要是节肢动物)和植物(n = 2171)的记录。环境变化与采样之间的最长间隔时间为500年,但通常小于100年(第三四分位数89.5;中位年龄45岁)。该数据库还包括一组描述研究系统的生物学和方法学方面以及测量特征的变量,以及主要信息来源中的抽样设计特征。这个新版本的PROCEED还包括一个时间序列数据集,该数据集包含在常规数据集中的记录子集。这些是异速研究,在整个研究期间有三次或更多的采样时间。该时间序列数据集包含655个时间序列,属于61项研究,来自156个系统和77个物种,包括哺乳动物(s = 140),鸟类(s = 77),爬行动物(s = 4),两栖动物(s = 8),鱼类(s = 404)和植物(s = 22)。这些数据在知识共享CC0 1.0通用公共领域奉献许可下发布。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
PROCEED v6.1: Phenotypic rates of change evolutionary and ecological database

Populations must continuously respond to environmental change or risk extinction. These responses can be measured as phenotypic rates of change, which allow researchers to predict their contemporary evolutionary responses. In 1999, a database of phenotypic rates of change in wild populations was compiled. Since then, researchers have used (and expanded) this database to examine the phenotypic responses as a function of the features of the study system (i.e., the population or set of populations, of a given species, that experienced a specific driver or disturbance), the measured traits, and methodological approaches. Therefore, PROCEED (Phenotypic Rates of Change Evolutionary and Ecological Database) is an ongoing compilation of rates of phenotypic change, typically calculated as Haldanes and Darwins, published in peer-reviewed literature (but also including data from theses and technical reports). Studies in this database measure the intraspecific change in quantitative (continuous or discrete) traits and report either the time elapsed from the onset of environmental novelty, or reference a historical or biological event reported in other sources (e.g., a mine opening or a well-documented biological invasion). Included studies either follow a single population through time (allochronic design) or compare two or more populations that diverged at a known time (synchronic design). Some included studies account for the total phenotypic variability in the field (i.e., phenotypic studies), while others employed common-garden or other quantitative genetic approaches to account for the heritable component of the phenotypic change (i.e., genetic studies). PROCEED includes systems in both natural and experimental conditions, provided that reproduction was not manipulated (i.e., artificial selection experiments were excluded). In the included experimental systems, the environment of the focal populations was manipulated (e.g., an herbivory exclusion experiment, where the type and load of herbivory are manipulated) but the studies did not deliberately select for trait values in the study population (e.g., the plant height). PROCEED does not include systems where the phenotypic change is presumably due to interspecific hybridization, polyploidy, or other chromosomal alterations. Here, we present the most recently updated PROCEED (Version 6.1). This new, curated version has 9263 records (n) collated from 326 studies, 1801 systems, and 428 species. The database includes records belonging to mammals (n = 686), birds (n = 1475), reptiles (n = 96), amphibians (n = 23), fishes (n = 3671), invertebrates (n = 1141, mostly arthropods), and plants (n = 2171). The maximum elapsed time between the environmental change and the sampling is 500 years but is typically less than 100 years (third quartile 89.5; median 45 years). The database also includes a set of variables describing biological and methodological aspects of the study system and measured traits, along with features of the sampling design in the primary source of information. This new version of PROCEED also includes a time series dataset comprising a subset of records included in the general dataset. These are allochronic studies with three or more sampling times throughout the entire study period. The time series dataset contains 655 time series (s)—belonging to 61 studies, from 156 systems, and 77 species—including mammals (s = 140), birds (s = 77), reptiles (s = 4), amphibians (s = 8), fishes (s = 404), and plants (s = 22). The data are released under a Creative Commons CC0 1.0 Universal Public Domain Dedication license.

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来源期刊
Ecology
Ecology 环境科学-生态学
CiteScore
8.30
自引率
2.10%
发文量
332
审稿时长
3 months
期刊介绍: Ecology publishes articles that report on the basic elements of ecological research. Emphasis is placed on concise, clear articles documenting important ecological phenomena. The journal publishes a broad array of research that includes a rapidly expanding envelope of subject matter, techniques, approaches, and concepts: paleoecology through present-day phenomena; evolutionary, population, physiological, community, and ecosystem ecology, as well as biogeochemistry; inclusive of descriptive, comparative, experimental, mathematical, statistical, and interdisciplinary approaches.
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