从全基因组关联研究中了解心脏传导障碍的基因。

IF 3.8 3区 医学 Q2 GENETICS & HEREDITY
Bingxun Li, Hongxuan Xu, Lin Wu
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引用次数: 0

摘要

背景:大量数据支持心脏传导障碍(CCDs)的遗传基础,但这些心律失常的遗传决定因素和分子机制尚不清楚,因此,我们试图确定与CCDs相关的遗传位点。方法:我们对全基因组关联研究进行荟萃分析,从英国生物银行和FinnGen联盟的公开数据中确定房室传导阻滞(AVB)、左束分支传导阻滞(LBBB)和右束分支传导阻滞(RBBB)的遗传位点。我们通过分析相关变异与心脏基因表达之间的关系,进行转录组分析,以及每个索引SNP的心电图全现象关联,评估了支持候选基因潜在因果效应的证据。结果:每个特征的分析包括超过700,000个个体。我们分别鉴定出10个、4个和0个AVB (PLEKHA3、TTN、FNDC3B、SENP2、SCN10A、RRH、PPARGC1A、PKD2L2、NKX2-5和TBX20)、LBBB (PPARGC1A、HAND1、TBX5和ADAMTS5)和RBBB的显著位点。转录组关联分析支持心脏预测SCN10A表达降低与AVB之间的关联。全表型关联鉴定了心血管和非心血管性状与索引snp的性状。结论:我们的分析强调了与通道功能、心脏发育、肌节功能和能量调节相关的基因区域是重要的潜在影响ccd易感性的因素。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Genetic insights into cardiac conduction disorders from genome-wide association studies.

Background: Substantial data support a heritable basis for cardiac conduction disorders (CCDs), but the genetic determinants and molecular mechanisms of these arrhythmias are poorly understood, therefore, we sought to identify genetic loci associated with CCDs.

Methods: We performed meta-analyses of genome-wide association studies to identify genetic loci for atrioventricular block (AVB), left bundle branch block (LBBB), and right bundle branch block (RBBB) from public data from the UK Biobank and FinnGen consortium. We assessed evidence supporting the potential causal effects of candidate genes by analyzing relations between associated variants and cardiac gene expression, performing transcriptome-wide analyses, and ECG-wide phenome-wide associations for each indexed SNP.

Results: Analysis comprised over 700,000 individuals for each trait. We identified 10, 4 and 0 significant loci for AVB (PLEKHA3, TTN, FNDC3B, SENP2, SCN10A, RRH, PPARGC1A, PKD2L2, NKX2-5 and TBX20), LBBB (PPARGC1A, HAND1, TBX5, and ADAMTS5) and RBBB, respectively. Transcriptome-wide association analysis supported an association between reduced predicted cardiac expression of SCN10A and AVB. Phenome-wide associations identified traits with both cardiovascular and non- cardiovascular traits with indexed SNPs.

Conclusions: Our analysis highlight gene regions associated with channel function, cardiac development, sarcomere function and energy modulation as important potential effectors of CCDs susceptibility.

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来源期刊
Human Genomics
Human Genomics GENETICS & HEREDITY-
CiteScore
6.00
自引率
2.20%
发文量
55
审稿时长
11 weeks
期刊介绍: Human Genomics is a peer-reviewed, open access, online journal that focuses on the application of genomic analysis in all aspects of human health and disease, as well as genomic analysis of drug efficacy and safety, and comparative genomics. Topics covered by the journal include, but are not limited to: pharmacogenomics, genome-wide association studies, genome-wide sequencing, exome sequencing, next-generation deep-sequencing, functional genomics, epigenomics, translational genomics, expression profiling, proteomics, bioinformatics, animal models, statistical genetics, genetic epidemiology, human population genetics and comparative genomics.
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