Suman Bhaumik, Dayou Zhang, Yinan Shu, Donald G Truhlar
{"title":"学习高效动力学势能面的双层参数管理神经网络方法","authors":"Suman Bhaumik, Dayou Zhang, Yinan Shu, Donald G Truhlar","doi":"10.1021/acs.jctc.4c01546","DOIUrl":null,"url":null,"abstract":"<p><p>A general difficulty with machine-learned potential energy surfaces is their unreliability in regions with little or no training data. The goal of the present work is to remedy this by a low-cost method for incorporating well understood features of potential energy surfaces into an efficient data-driven machine learning algorithm. Our focus is on regions where conventional surface fitting does not need large amounts of accurate data, in particular, geometries with large separations of subsystems-where it is well recognized that the potential should reach its asymptotic form-and geometries with very close atoms-where the potential should be repulsive enough to prevent trajectories from reaching classically inaccessible regions but need not be highly quantitative. The new method involves a neural network (NN) with a parametrically managed activation function (PMAF) and two levels of electronic structure, a higher level (HL) and a lower level (LL). The resulting NN is called a dual-level parametrically managed neural network (DL-PMNN). For the present example, the HL is an accurate density functional method (CF22D/may-cc-pVTZ), and the LL is an inexpensive density functional method (MPW1K/MIDIY). We use the LL to ensure correct behavior of the potential at large and small distances; the goal is to reach HL accuracy for dynamics without making HL calculations in regions where the LL can guide the fit. To illustrate the new method, we fit the potential energy surface for dissociation of the S-H bond of <i>ortho</i>-fluorothiophenol in the ground electronic state, and we show that the method yields a good fit and efficient trajectory calculations without crashes.</p>","PeriodicalId":45,"journal":{"name":"Journal of Chemical Theory and Computation","volume":" ","pages":""},"PeriodicalIF":5.7000,"publicationDate":"2025-02-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Dual-Level Parametrically Managed Neural Network Method for Learning a Potential Energy Surface for Efficient Dynamics.\",\"authors\":\"Suman Bhaumik, Dayou Zhang, Yinan Shu, Donald G Truhlar\",\"doi\":\"10.1021/acs.jctc.4c01546\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p>A general difficulty with machine-learned potential energy surfaces is their unreliability in regions with little or no training data. The goal of the present work is to remedy this by a low-cost method for incorporating well understood features of potential energy surfaces into an efficient data-driven machine learning algorithm. Our focus is on regions where conventional surface fitting does not need large amounts of accurate data, in particular, geometries with large separations of subsystems-where it is well recognized that the potential should reach its asymptotic form-and geometries with very close atoms-where the potential should be repulsive enough to prevent trajectories from reaching classically inaccessible regions but need not be highly quantitative. The new method involves a neural network (NN) with a parametrically managed activation function (PMAF) and two levels of electronic structure, a higher level (HL) and a lower level (LL). The resulting NN is called a dual-level parametrically managed neural network (DL-PMNN). For the present example, the HL is an accurate density functional method (CF22D/may-cc-pVTZ), and the LL is an inexpensive density functional method (MPW1K/MIDIY). We use the LL to ensure correct behavior of the potential at large and small distances; the goal is to reach HL accuracy for dynamics without making HL calculations in regions where the LL can guide the fit. To illustrate the new method, we fit the potential energy surface for dissociation of the S-H bond of <i>ortho</i>-fluorothiophenol in the ground electronic state, and we show that the method yields a good fit and efficient trajectory calculations without crashes.</p>\",\"PeriodicalId\":45,\"journal\":{\"name\":\"Journal of Chemical Theory and Computation\",\"volume\":\" \",\"pages\":\"\"},\"PeriodicalIF\":5.7000,\"publicationDate\":\"2025-02-27\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Journal of Chemical Theory and Computation\",\"FirstCategoryId\":\"92\",\"ListUrlMain\":\"https://doi.org/10.1021/acs.jctc.4c01546\",\"RegionNum\":1,\"RegionCategory\":\"化学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q2\",\"JCRName\":\"CHEMISTRY, PHYSICAL\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Journal of Chemical Theory and Computation","FirstCategoryId":"92","ListUrlMain":"https://doi.org/10.1021/acs.jctc.4c01546","RegionNum":1,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"CHEMISTRY, PHYSICAL","Score":null,"Total":0}
Dual-Level Parametrically Managed Neural Network Method for Learning a Potential Energy Surface for Efficient Dynamics.
A general difficulty with machine-learned potential energy surfaces is their unreliability in regions with little or no training data. The goal of the present work is to remedy this by a low-cost method for incorporating well understood features of potential energy surfaces into an efficient data-driven machine learning algorithm. Our focus is on regions where conventional surface fitting does not need large amounts of accurate data, in particular, geometries with large separations of subsystems-where it is well recognized that the potential should reach its asymptotic form-and geometries with very close atoms-where the potential should be repulsive enough to prevent trajectories from reaching classically inaccessible regions but need not be highly quantitative. The new method involves a neural network (NN) with a parametrically managed activation function (PMAF) and two levels of electronic structure, a higher level (HL) and a lower level (LL). The resulting NN is called a dual-level parametrically managed neural network (DL-PMNN). For the present example, the HL is an accurate density functional method (CF22D/may-cc-pVTZ), and the LL is an inexpensive density functional method (MPW1K/MIDIY). We use the LL to ensure correct behavior of the potential at large and small distances; the goal is to reach HL accuracy for dynamics without making HL calculations in regions where the LL can guide the fit. To illustrate the new method, we fit the potential energy surface for dissociation of the S-H bond of ortho-fluorothiophenol in the ground electronic state, and we show that the method yields a good fit and efficient trajectory calculations without crashes.
期刊介绍:
The Journal of Chemical Theory and Computation invites new and original contributions with the understanding that, if accepted, they will not be published elsewhere. Papers reporting new theories, methodology, and/or important applications in quantum electronic structure, molecular dynamics, and statistical mechanics are appropriate for submission to this Journal. Specific topics include advances in or applications of ab initio quantum mechanics, density functional theory, design and properties of new materials, surface science, Monte Carlo simulations, solvation models, QM/MM calculations, biomolecular structure prediction, and molecular dynamics in the broadest sense including gas-phase dynamics, ab initio dynamics, biomolecular dynamics, and protein folding. The Journal does not consider papers that are straightforward applications of known methods including DFT and molecular dynamics. The Journal favors submissions that include advances in theory or methodology with applications to compelling problems.