学习高效动力学势能面的双层参数管理神经网络方法

IF 5.7 1区 化学 Q2 CHEMISTRY, PHYSICAL
Suman Bhaumik, Dayou Zhang, Yinan Shu, Donald G Truhlar
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引用次数: 0

摘要

机器学习势能面的一个普遍难题是,在训练数据很少或没有训练数据的区域,势能面并不可靠。本研究的目标是通过一种低成本的方法,将人们熟知的势能曲面特征融入到高效的数据驱动型机器学习算法中,从而解决这一问题。我们的重点是传统的表面拟合不需要大量精确数据的区域,特别是子系统分离较大的几何结构--在这些几何结构中,人们公认势能应达到其渐近形式;以及原子非常接近的几何结构--在这些几何结构中,势能应具有足够的排斥性,以防止轨迹到达经典的无法进入的区域,但不需要高度定量。新方法涉及一个具有参数管理激活函数(PMAF)的神经网络(NN)和两级电子结构,即高级(HL)和低级(LL)。由此产生的 NN 被称为双级参数管理神经网络(DL-PMNN)。在本例中,HL 是一种精确的密度泛函方法(CF22D/may-cc-pVTZ),LL 是一种廉价的密度泛函方法(MPW1K/MIDIY)。我们使用 LL 来确保电势在大距离和小距离上的正确行为;目标是在动力学上达到 HL 的精确度,而无需在 LL 可以指导拟合的区域进行 HL 计算。为了说明这一新方法,我们拟合了基态电子中正氟苯硫酚 S-H 键解离的势能面,结果表明该方法拟合效果良好,轨迹计算效率高,没有碰撞。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Dual-Level Parametrically Managed Neural Network Method for Learning a Potential Energy Surface for Efficient Dynamics.

A general difficulty with machine-learned potential energy surfaces is their unreliability in regions with little or no training data. The goal of the present work is to remedy this by a low-cost method for incorporating well understood features of potential energy surfaces into an efficient data-driven machine learning algorithm. Our focus is on regions where conventional surface fitting does not need large amounts of accurate data, in particular, geometries with large separations of subsystems-where it is well recognized that the potential should reach its asymptotic form-and geometries with very close atoms-where the potential should be repulsive enough to prevent trajectories from reaching classically inaccessible regions but need not be highly quantitative. The new method involves a neural network (NN) with a parametrically managed activation function (PMAF) and two levels of electronic structure, a higher level (HL) and a lower level (LL). The resulting NN is called a dual-level parametrically managed neural network (DL-PMNN). For the present example, the HL is an accurate density functional method (CF22D/may-cc-pVTZ), and the LL is an inexpensive density functional method (MPW1K/MIDIY). We use the LL to ensure correct behavior of the potential at large and small distances; the goal is to reach HL accuracy for dynamics without making HL calculations in regions where the LL can guide the fit. To illustrate the new method, we fit the potential energy surface for dissociation of the S-H bond of ortho-fluorothiophenol in the ground electronic state, and we show that the method yields a good fit and efficient trajectory calculations without crashes.

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来源期刊
Journal of Chemical Theory and Computation
Journal of Chemical Theory and Computation 化学-物理:原子、分子和化学物理
CiteScore
9.90
自引率
16.40%
发文量
568
审稿时长
1 months
期刊介绍: The Journal of Chemical Theory and Computation invites new and original contributions with the understanding that, if accepted, they will not be published elsewhere. Papers reporting new theories, methodology, and/or important applications in quantum electronic structure, molecular dynamics, and statistical mechanics are appropriate for submission to this Journal. Specific topics include advances in or applications of ab initio quantum mechanics, density functional theory, design and properties of new materials, surface science, Monte Carlo simulations, solvation models, QM/MM calculations, biomolecular structure prediction, and molecular dynamics in the broadest sense including gas-phase dynamics, ab initio dynamics, biomolecular dynamics, and protein folding. The Journal does not consider papers that are straightforward applications of known methods including DFT and molecular dynamics. The Journal favors submissions that include advances in theory or methodology with applications to compelling problems.
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