Albert Masip-Sánchez, Josep M Poblet, Xavier López
{"title":"DESC:在解决方案中有效考虑动态环境影响的自动策略。","authors":"Albert Masip-Sánchez, Josep M Poblet, Xavier López","doi":"10.1021/acs.jctc.5c00002","DOIUrl":null,"url":null,"abstract":"<p><p>The properties and dynamic behavior of molecules in liquid solutions depend critically on the solvent and other species, or cosolutes, including electrolytes (if present), especially when molecular association or pairing occurs. In Quantum Mechanical (QM) calculations, the electronic structure of molecules in liquid solution is typically obtained with implicit solvent models (ISMs). However, ISMs cannot differentiate between, for example, cation types (e.g., Cs<sup>+</sup> versus <i>n</i>Bu<sub>4</sub>N<sup>+</sup>), leading to limited accuracy in capturing possible solute-specific interactions. Addressing this issue in QM calculations often requires an explicit treatment of the cosolute, typically a counterion, a challenging approach due to the definition of representative cosolute positions, numerical convergence, and high computational cost for bulky species. A new computational strategy called Dynamic Environment in Solution by Clustering (DESC) is herein presented, which leverages classical Molecular Dynamics (MD) data to feed QM calculations, enabling the inclusion of counterion-specific effects with greater detail and efficiency than ISMs. DESC is particularly advantageous in cases where ion pairing/aggregation is significant, offering chemically representative QM results at a small fraction of the computational cost associated with the explicit inclusion of counterions in the model. This work presents MD data on polyoxometalate-counterion-solvent systems, introduces the philosophy behind DESC and its operational details, and applies it to polyoxometalate solutions and other relevant systems, comparing outcomes with benchmark QM/ISM calculations.</p>","PeriodicalId":45,"journal":{"name":"Journal of Chemical Theory and Computation","volume":" ","pages":""},"PeriodicalIF":5.7000,"publicationDate":"2025-02-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"DESC: An Automated Strategy to Efficiently Account for Dynamic Environment Effects in Solution.\",\"authors\":\"Albert Masip-Sánchez, Josep M Poblet, Xavier López\",\"doi\":\"10.1021/acs.jctc.5c00002\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p>The properties and dynamic behavior of molecules in liquid solutions depend critically on the solvent and other species, or cosolutes, including electrolytes (if present), especially when molecular association or pairing occurs. In Quantum Mechanical (QM) calculations, the electronic structure of molecules in liquid solution is typically obtained with implicit solvent models (ISMs). However, ISMs cannot differentiate between, for example, cation types (e.g., Cs<sup>+</sup> versus <i>n</i>Bu<sub>4</sub>N<sup>+</sup>), leading to limited accuracy in capturing possible solute-specific interactions. Addressing this issue in QM calculations often requires an explicit treatment of the cosolute, typically a counterion, a challenging approach due to the definition of representative cosolute positions, numerical convergence, and high computational cost for bulky species. A new computational strategy called Dynamic Environment in Solution by Clustering (DESC) is herein presented, which leverages classical Molecular Dynamics (MD) data to feed QM calculations, enabling the inclusion of counterion-specific effects with greater detail and efficiency than ISMs. DESC is particularly advantageous in cases where ion pairing/aggregation is significant, offering chemically representative QM results at a small fraction of the computational cost associated with the explicit inclusion of counterions in the model. This work presents MD data on polyoxometalate-counterion-solvent systems, introduces the philosophy behind DESC and its operational details, and applies it to polyoxometalate solutions and other relevant systems, comparing outcomes with benchmark QM/ISM calculations.</p>\",\"PeriodicalId\":45,\"journal\":{\"name\":\"Journal of Chemical Theory and Computation\",\"volume\":\" \",\"pages\":\"\"},\"PeriodicalIF\":5.7000,\"publicationDate\":\"2025-02-28\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Journal of Chemical Theory and Computation\",\"FirstCategoryId\":\"92\",\"ListUrlMain\":\"https://doi.org/10.1021/acs.jctc.5c00002\",\"RegionNum\":1,\"RegionCategory\":\"化学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q2\",\"JCRName\":\"CHEMISTRY, PHYSICAL\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Journal of Chemical Theory and Computation","FirstCategoryId":"92","ListUrlMain":"https://doi.org/10.1021/acs.jctc.5c00002","RegionNum":1,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"CHEMISTRY, PHYSICAL","Score":null,"Total":0}
DESC: An Automated Strategy to Efficiently Account for Dynamic Environment Effects in Solution.
The properties and dynamic behavior of molecules in liquid solutions depend critically on the solvent and other species, or cosolutes, including electrolytes (if present), especially when molecular association or pairing occurs. In Quantum Mechanical (QM) calculations, the electronic structure of molecules in liquid solution is typically obtained with implicit solvent models (ISMs). However, ISMs cannot differentiate between, for example, cation types (e.g., Cs+ versus nBu4N+), leading to limited accuracy in capturing possible solute-specific interactions. Addressing this issue in QM calculations often requires an explicit treatment of the cosolute, typically a counterion, a challenging approach due to the definition of representative cosolute positions, numerical convergence, and high computational cost for bulky species. A new computational strategy called Dynamic Environment in Solution by Clustering (DESC) is herein presented, which leverages classical Molecular Dynamics (MD) data to feed QM calculations, enabling the inclusion of counterion-specific effects with greater detail and efficiency than ISMs. DESC is particularly advantageous in cases where ion pairing/aggregation is significant, offering chemically representative QM results at a small fraction of the computational cost associated with the explicit inclusion of counterions in the model. This work presents MD data on polyoxometalate-counterion-solvent systems, introduces the philosophy behind DESC and its operational details, and applies it to polyoxometalate solutions and other relevant systems, comparing outcomes with benchmark QM/ISM calculations.
期刊介绍:
The Journal of Chemical Theory and Computation invites new and original contributions with the understanding that, if accepted, they will not be published elsewhere. Papers reporting new theories, methodology, and/or important applications in quantum electronic structure, molecular dynamics, and statistical mechanics are appropriate for submission to this Journal. Specific topics include advances in or applications of ab initio quantum mechanics, density functional theory, design and properties of new materials, surface science, Monte Carlo simulations, solvation models, QM/MM calculations, biomolecular structure prediction, and molecular dynamics in the broadest sense including gas-phase dynamics, ab initio dynamics, biomolecular dynamics, and protein folding. The Journal does not consider papers that are straightforward applications of known methods including DFT and molecular dynamics. The Journal favors submissions that include advances in theory or methodology with applications to compelling problems.