牙周炎和前列腺癌之间潜在的共同分子机制:差异表达mirna的网络分析。

IF 1.8 4区 医学 Q3 MEDICINE, RESEARCH & EXPERIMENTAL
In vivo Pub Date : 2025-03-01 DOI:10.21873/invivo.13863
Aylin Kanli, Deniz Sunnetci-Akkoyunlu, Nurhan Kulcu-Sarikaya, Cansu Ugurtaş, Gurler Akpinar, Murat Kasap
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引用次数: 0

摘要

背景/目的:前列腺癌是男性癌症相关死亡的第二大原因。牙周炎被认为是前列腺癌的高危因素,但其遗传机制尚不清楚。本研究旨在鉴定与牙周炎和前列腺癌相关的异常mirna、相关基因、信号通路和化合物。材料和方法:从GEO数据库中获取前列腺癌和牙周炎的miRNA表达数据集。鉴定了差异表达的miRNAs (DEmiRNAs),并确定了两个数据集之间的共同DEmiRNAs (Co-DEmiRNAs)。包括miRNet 2.0在内的co - demirna靶网络结构和功能分析,包括co - demirna -基因、co - demirna -转录因子(TF)和co - demirna -化合物网络。使用KEGG、Reactome通路和基因本体(Gene Ontology, GO)对Co-DEmiRNA基因和Co-DEmiRNA- tf网络进行功能富集分析。用TCGA miRNA-seq数据验证Co-up和co-down demirna。结果:hsa-mir-148a-3p、hsa-mir-148b-5p和hsa-mir-623是Co-DEmiRNA-Target网络中的顶级miRNA节点。最重要的候选miRNA失调基因是POU2F1、TMOD3、SCD、PRRC2C和MAT2A,而最重要的失调TF包括TP53、CREB1、DNMT1、E2F1和EGR1。三氧化二砷、吉西他滨和1,2,6-三- o -没食子酰基- β - d -葡萄糖吡喃糖是最相关的化合物。功能分析揭示了多种细胞信号通路,如NOTCH和CREB磷酸化,以及RNA代谢和转录等过程的调节。结论:我们的研究提示了将牙周炎与前列腺癌联系起来的候选分子机制,突出了针对这两种疾病的潜在化合物。这些发现为指导今后的基础和临床研究奠定了基础。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Potential Common Molecular Mechanisms Between Periodontitis and Prostate Cancer: A Network Analysis of Differentially Expressed miRNAs.

Background/aim: Prostate cancer is the second leading cause of cancer-related deaths in men. Periodontitis is considered a high-risk factor for prostate cancer, but the genetic mechanism is unclear. This study aims to identify dysregulated miRNAs, their associated genes, signaling pathways, and compounds linking periodontitis to prostate cancer.

Materials and methods: The miRNA expression datasets of prostate cancer and periodontitis were obtained from the GEO database. Differentially expressed miRNAs (DEmiRNAs) were identified, and common DEmiRNAs (Co-DEmiRNAs) between both datasets were determined. The Co-DEmiRNA-target network structure and functional analyses, including miRNet 2.0, were performed, encompassing Co-DEmiRNA-gene, Co-DEmiRNA-transcription factor (TF), and Co-DEmiRNA-compound networks. Functional enrichment analysis for Co-DEmiRNA genes and Co-DEmiRNA-TF networks was conducted using KEGG, Reactome pathways, and Gene Ontology (GO). Co-up and co-down DEmiRNAs were validated with TCGA miRNA-seq data.

Results: hsa-mir-148a-3p, hsa-mir-148b-5p, and hsa-mir-623 are the top miRNA nodes in Co-DEmiRNA-Target networks. The most significant candidate miRNA dysregulation genes are POU2F1, TMOD3, SCD, PRRC2C, and MAT2A, while the most important dysregulation TF includes TP53, CREB1, DNMT1, E2F1, and EGR1. Arsenic trioxide, gemcitabine, and 1,2,6-tri-O-galloyl-beta-D-glucopyranose are the most correlated compounds. Functional analyses revealed multiple cell signaling pathways, such as NOTCH and CREB phosphorylation, and regulation of processes, such as RNA metabolism and transcription.

Conclusion: Our study suggests candidate molecular mechanisms linking periodontitis to prostate cancer, highlighting potential compounds targeting both diseases. These findings provide a foundation for guiding future basic and clinical research.

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来源期刊
In vivo
In vivo 医学-医学:研究与实验
CiteScore
4.20
自引率
4.30%
发文量
330
审稿时长
3-8 weeks
期刊介绍: IN VIVO is an international peer-reviewed journal designed to bring together original high quality works and reviews on experimental and clinical biomedical research within the frames of physiology, pathology and disease management. The topics of IN VIVO include: 1. Experimental development and application of new diagnostic and therapeutic procedures; 2. Pharmacological and toxicological evaluation of new drugs, drug combinations and drug delivery systems; 3. Clinical trials; 4. Development and characterization of models of biomedical research; 5. Cancer diagnosis and treatment; 6. Immunotherapy and vaccines; 7. Radiotherapy, Imaging; 8. Tissue engineering, Regenerative medicine; 9. Carcinogenesis.
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