Lingling Zhu, Ya Dong, Hang Guo, Jie Qiu, Jun Guo, Yonghui Hu, Congqing Pan
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We employed Weighted Gene Co-expression Network Analysis (WGCNA) coupled with machine learning techniques to sift through hub differentially expressed genes (DEGs). Functional enrichment and protein-protein interaction (PPI) network analysis were also conducted to pinpoint key genes functions. Subsequent in vitro and in vivo experiments were performed to validate the findings.</p><p><strong>Results: </strong>Our analysis revealed six core genes significantly associated with DCM. 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引用次数: 0
摘要
背景:糖尿病性心肌病(DCM)是一种由糖尿病引起的心脏疾病,在没有冠状动脉疾病或高血压的情况下,以心功能障碍为特征。随着全球糖尿病患者的增加,DCM的患病率也在上升,因此有必要开发早期诊断标志物和治疗靶点。本研究将生物信息学分析与实验验证相结合,以确定DCM的潜在生物标志物。方法:从gene expression Omnibus (GEO)数据库中进行基因表达数据挖掘。我们采用加权基因共表达网络分析(WGCNA)结合机器学习技术筛选中心差异表达基因(DEGs)。功能富集和蛋白相互作用(PPI)网络分析也被用于确定关键基因的功能。随后进行了体外和体内实验来验证这些发现。结果:我们的分析揭示了6个与DCM显著相关的核心基因。在高糖培养的心肌细胞和DCM动物模型中,Dusp15的表达均显著下调,并得到验证,提示其在DCM发病机制中可能发挥作用。结论:生物信息学与实验方法的结合已经确定Dusp15是一个有希望的DCM生物标志物候选者,为早期诊断和潜在的治疗开发提供了有价值的见解。
Murine Model Insights: Identifying Dusp15 as a Novel Biomarker for Diabetic Cardiomyopathy Uncovered Through Integrated Omics Analysis and Experimental Validation.
Background: Diabetic Cardiomyopathy (DCM) is a heart condition that arises specifically from diabetes mellitus, characterized by cardiac dysfunction in the absence of coronary artery disease or hypertension. The prevalence of DCM is rising in tandem with the global increase in diabetes, necessitating the development of early diagnostic markers and therapeutic targets. This study integrates bioinformatics analysis with experimental validation to identify potential biomarkers for DCM.
Methods: We performed gene expression data mining from the Gene Expression Omnibus (GEO) database. We employed Weighted Gene Co-expression Network Analysis (WGCNA) coupled with machine learning techniques to sift through hub differentially expressed genes (DEGs). Functional enrichment and protein-protein interaction (PPI) network analysis were also conducted to pinpoint key genes functions. Subsequent in vitro and in vivo experiments were performed to validate the findings.
Results: Our analysis revealed six core genes significantly associated with DCM. The expression of Dusp15 was notably downregulated and validated in both high-glucose cultured cardiomyocytes and DCM animal models, suggesting its potential role in DCM pathogenesis.
Conclusion: The integration of bioinformatics with experimental approaches has identified Dusp15 as a promising candidate for a DCM biomarker, offering valuable insights for early diagnosis and potential therapeutic development.
期刊介绍:
An international, peer-reviewed, open access, online journal. The journal is committed to the rapid publication of the latest laboratory and clinical findings in the fields of diabetes, metabolic syndrome and obesity research. Original research, review, case reports, hypothesis formation, expert opinion and commentaries are all considered for publication.