IF 2.4 4区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY
Debojyati Datta, Semanti Ghosh
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引用次数: 0

摘要

登革热、出血性登革热和登革休克综合征是由登革热蚊子叮咬引起的。发烧和头痛等常见症状与不同的内科疾病有关。从以往和正在进行的研究来看,在印度,登革热、出血性登革热和登革休克综合征之间的关联还不清楚是由哪些基因或蛋白信号通路机制引起的。在我们的研究中,基因表达数据集是从 GEO 数据库中获取的,登录号为 GSE94892。在这里,我们对每一位 DF、DHF 和 DSS 患者的外周血单核细胞样本进行了 mRNA 序列分析。GEO2R 被用于利用登革热数据集进行差异基因表达分析。建立了蛋白质-蛋白质相互作用网络,在 SR plot 中进行了基因组 GO 富集和 KEGG 通路富集,并在 STRING 和 MCODE 中进行了聚类分析。在这项研究中,我们在所有三个条件下都诊断出了 10 个枢纽基因。基因集显示,在每种情况下诊断出的 10 个中枢基因构成了在印度所有 3 种情况下发现的常见中枢基因的最佳范围。这项研究的结论有助于在印度处理 DEV 的背景下治疗 DF、DHF 和 DSS 病症。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Analyzing the Molecular Signature Genes and Pathways of Dengue Fever, Dengue Hemorrhagic Fever and Dengue Shock Syndrome Caused by Dengue Virus in India.

Dengue fever, dengue hemorrhagic dengue fever and dengue shock syndrome were caused by Dengue mosquito bites. Common signs such as fever and headache, are connected to distinctive medical disorders. From the previous and ongoing studies, it is far unknown what genes or protein signaling pathway mechanism underlies the association between DF, DHF and DSS in Indian context. In our study, the gene expression dataset was retrieved from the GEO database with accession number GSE94892. Here, mRNA sequence analysis done of each DF, DHF and DSS patients from peripheral blood mononuclear cells sample. GEO2R became used to carry out differential gene expression analysis using a dengue data set. Protein-protein interaction networks have been built, gene set GO enrichment and KEGG Pathway enrichment done in SR plot, and cluster analyses have been performed in STRING and MCODE. During this study, we diagnosed 10 hub genes in all 3 condition. The gene set of showed that the ten hub genes diagnosed in each condition constituted the best range of common hub genes discovered beneath all 3 conditions in India. The conclusion of this study can be beneficial for treating DF, DHF and DSS conditions within the context of handling DEV in India.

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来源期刊
Molecular Biotechnology
Molecular Biotechnology 医学-生化与分子生物学
CiteScore
4.10
自引率
3.80%
发文量
165
审稿时长
6 months
期刊介绍: Molecular Biotechnology publishes original research papers on the application of molecular biology to both basic and applied research in the field of biotechnology. Particular areas of interest include the following: stability and expression of cloned gene products, cell transformation, gene cloning systems and the production of recombinant proteins, protein purification and analysis, transgenic species, developmental biology, mutation analysis, the applications of DNA fingerprinting, RNA interference, and PCR technology, microarray technology, proteomics, mass spectrometry, bioinformatics, plant molecular biology, microbial genetics, gene probes and the diagnosis of disease, pharmaceutical and health care products, therapeutic agents, vaccines, gene targeting, gene therapy, stem cell technology and tissue engineering, antisense technology, protein engineering and enzyme technology, monoclonal antibodies, glycobiology and glycomics, and agricultural biotechnology.
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