Ruhani Khanna , Yvonne Reinwald , Richard P. Hugtenburg , Alejandro Bertolet , Ahmad Serjouei
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引用次数: 0
摘要
GEANT4-DNA 是对广泛使用的 GEANT4 蒙特卡罗工具包的扩展。该扩展工具包侧重于模拟电离辐射的物理、化学和生物阶段,以便在细胞和 DNA 层面的相互作用中进行放射生物学应用。迄今为止,有关 GEANT4-DNA 的综述论文仅侧重于评估部分最新开发成果,更多关注的是机理方面的开发,而非生物特定几何结构方面的进展。在这项工作中,讨论了生物分析和已开发的生物几何图形的概况,强调了 GEANT4-DNA 在此应用领域的最新发展和未来可能的发展途径。此外,还概述了生物组织水平,即 DNA、细胞和种群水平,以及 GEANT4-DNA 如何模拟物理、化学和生物过程。本综述强调了持续开发特定生物几何模型的必要性,以及根据特定模型中考虑的生物过程提供个性化 DNA 损伤分析参数的必要性。它还深入介绍了在所有生物组织层面(DNA、细胞和群体)取得的进展,以及使用合作平台开发的模型与 GEANT4 一起提供更详细的几何图形和生物损伤分析。我们分析讨论了所介绍的发展情况,以及 GEANT4-DNA 的主要发现和前景。最后,对未来必要的发展进行了展望,因为所讨论的生物分析和生物几何图形方面的许多进展尚未充分发挥其潜力。利用本综述中讨论的进展开发 GEANT4-DNA,为评估与放射生物学研究相当的生物损伤提供了有利的方法。
Review of the geometrical developments in GEANT4-DNA: From a biological perspective
GEANT4-DNA is an expansion of the widely utilised GEANT4 Monte Carlo toolkit. This extension focuses on modelling the physical, chemical, and biological stages of ionising radiation for radiobiological applications at cellular and DNA level interactions. To date, review papers on GEANT4-DNA focus solely on evaluating a selection of the latest developments with a greater focus on mechanistic developments rather than progress in biologically specific geometries. In this work, an overview of biological analysis and biological geometries that have been developed are discussed, highlighting the latest developments and future possible development avenues for GEANT4-DNA for this application. An overview of the biological organisation levels, namely DNA, cellular, and population levels, and how GEANT4-DNA models the physical, chemical, and biological processes are also described. This review emphasises the need for persistent development of specific biological geometry accompanied by personalised DNA damage analysis parameters dependent on the biological processes considered within a specific model. It also provides an in-depth understanding of the advances at all the biological organisation levels (DNA, cellular, and population) and the use of co-operative platforms developed to model alongside GEANT4 to provide further detailed geometries and or biological damage analysis. The developments presented have been analytically discussed along with their key findings and prospects for GEANT4-DNA. Finally, a perspective on future necessary developments is portrayed since many of the advancements in the biological analysis and biological geometries discussed have not been exploited to their full potential. The development of GEANT4-DNA, using the advances discussed in this review, provides a favourable method for the evaluation of biological damage comparable to radiobiological studies.
期刊介绍:
Reviews in Physics is a gold open access Journal, publishing review papers on topics in all areas of (applied) physics. The journal provides a platform for researchers who wish to summarize a field of physics research and share this work as widely as possible. The published papers provide an overview of the main developments on a particular topic, with an emphasis on recent developments, and sketch an outlook on future developments. The journal focuses on short review papers (max 15 pages) and these are freely available after publication. All submitted manuscripts are fully peer-reviewed and after acceptance a publication fee is charged to cover all editorial, production, and archiving costs.