在细胞迁移的随机和平均场模型中建模粘附。

IF 2.4 3区 物理与天体物理 Q1 Mathematics
Shahzeb Raja Noureen, Richard L Mort, Christian A Yates
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引用次数: 0

摘要

细胞间的黏附在许多生物过程中起着重要的作用,如组织形态形成和稳态、伤口愈合和癌细胞转移。从数学的角度来看,以前已经使用离散和连续模型分析了多种细胞类型之间的粘附,包括细胞Potts模型和偏微分方程(PDEs)。虽然这些模型可以很好地代表某些生物情况,但细胞波茨模型在计算上可能很昂贵,连续体模型只捕获细胞群体的宏观行为,忽略了细胞动力学的随机性和离散性。元胞自动机模型使我们能够解决这些问题,并可用于各种各样的生物系统。在本文中,我们考虑元胞自动机方法,并开发了一个基于点阵代理的模型(ABM),用于由两种细胞类型组成的群体中的细胞迁移和粘附。通过推导和比较相应的PDE与ABM,我们证明在PDE模型中不可能进行细胞聚集和细胞排序。因此,我们提出了一组离散平均方程,可以更好地捕捉ABM在一维和二维中的行为。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Modeling adhesion in stochastic and mean-field models of cell migration.

Adhesion between cells plays an important role in many biological processes such as tissue morphogenesis and homeostasis, wound healing, and cancer cell metastasis. From a mathematical perspective, adhesion between multiple cell types has been previously analyzed using discrete and continuum models, including the cellular Potts models and partial differential equations (PDEs). While these models can represent certain biological situations well, cellular Potts models can be computationally expensive, and continuum models capture only the macroscopic behavior of a population of cells, ignoring stochasticity and the discrete nature of cell dynamics. Cellular automaton models allow us to address these problems and can be used for a wide variety of biological systems. In this paper we consider a cellular automaton approach and develop an on-lattice agent-based model (ABM) for cell migration and adhesion in a population composed of two cell types. By deriving and comparing the corresponding PDEs to the ABM, we demonstrate that cell aggregation and cell sorting are not possible in the PDE model. Therefore, we propose a set of discrete mean equations which better capture the behavior of the ABM in one and two dimensions.

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来源期刊
Physical review. E
Physical review. E 物理-物理:流体与等离子体
CiteScore
4.60
自引率
16.70%
发文量
0
审稿时长
3.3 months
期刊介绍: Physical Review E (PRE), broad and interdisciplinary in scope, focuses on collective phenomena of many-body systems, with statistical physics and nonlinear dynamics as the central themes of the journal. Physical Review E publishes recent developments in biological and soft matter physics including granular materials, colloids, complex fluids, liquid crystals, and polymers. The journal covers fluid dynamics and plasma physics and includes sections on computational and interdisciplinary physics, for example, complex networks.
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