在原始细胞中维持自催化反应系统:非酶RNA模板和复制与代谢之间的联系。

IF 2.4 3区 物理与天体物理 Q1 Mathematics
Quentin C C Sanders, Alex Verbeem, Paul G Higgs
{"title":"在原始细胞中维持自催化反应系统:非酶RNA模板和复制与代谢之间的联系。","authors":"Quentin C C Sanders, Alex Verbeem, Paul G Higgs","doi":"10.1103/PhysRevE.111.014424","DOIUrl":null,"url":null,"abstract":"<p><p>The first protocells must have been driven by a reaction system in which autocatalysis is maintained inside the cell while food molecules outside the cell are unreactive. We show that if there is a second-order autocatalytic mechanism, then an active state can be stable inside the cell with a high catalyst concentration while the environment remains stable in an unreactive state with no catalyst. Addition of a small amount of catalyst to the environment does not cause the initiation of the autocatalytic cycle outside the cell. In contrast, for a first-order mechanism, addition of a small amount of catalyst initiates the reaction outside the cell unless there is continual removal of the catalyst from the environment. Hence, a second-order reaction mechanism maintains the difference between the inside and outside of a protocell much better than a first-order mechanism. The formose reaction, although a prebiotically plausible autocatalytic system, is first order and therefore is unlikely as a means of support for the first protocells. We give other theoretical examples of first- and second-order reaction networks but note there are few known real-world chemical systems that fit these schemes. However, we show that nonenzymatic RNA templating constitutes a second-order autocatalytic system with the necessary properties to support a protocell. Templating is maintained inside the cell but is not initiated outside the cell. If the reaction is driven by an external supply of activated nucleotides, then templating is itself a metabolic cycle. It is not necessary to have an additional separate metabolic cycle before templating reactions can occur. In this view, templating reactions, which are usually considered as the origin of replication and heredity, are also the origin of metabolism.</p>","PeriodicalId":20085,"journal":{"name":"Physical review. E","volume":"111 1-1","pages":"014424"},"PeriodicalIF":2.4000,"publicationDate":"2025-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Maintaining an autocatalytic reaction system in a protocell: Nonenzymatic RNA templating and the link between replication and metabolism.\",\"authors\":\"Quentin C C Sanders, Alex Verbeem, Paul G Higgs\",\"doi\":\"10.1103/PhysRevE.111.014424\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p>The first protocells must have been driven by a reaction system in which autocatalysis is maintained inside the cell while food molecules outside the cell are unreactive. We show that if there is a second-order autocatalytic mechanism, then an active state can be stable inside the cell with a high catalyst concentration while the environment remains stable in an unreactive state with no catalyst. Addition of a small amount of catalyst to the environment does not cause the initiation of the autocatalytic cycle outside the cell. In contrast, for a first-order mechanism, addition of a small amount of catalyst initiates the reaction outside the cell unless there is continual removal of the catalyst from the environment. Hence, a second-order reaction mechanism maintains the difference between the inside and outside of a protocell much better than a first-order mechanism. The formose reaction, although a prebiotically plausible autocatalytic system, is first order and therefore is unlikely as a means of support for the first protocells. We give other theoretical examples of first- and second-order reaction networks but note there are few known real-world chemical systems that fit these schemes. However, we show that nonenzymatic RNA templating constitutes a second-order autocatalytic system with the necessary properties to support a protocell. Templating is maintained inside the cell but is not initiated outside the cell. If the reaction is driven by an external supply of activated nucleotides, then templating is itself a metabolic cycle. It is not necessary to have an additional separate metabolic cycle before templating reactions can occur. In this view, templating reactions, which are usually considered as the origin of replication and heredity, are also the origin of metabolism.</p>\",\"PeriodicalId\":20085,\"journal\":{\"name\":\"Physical review. E\",\"volume\":\"111 1-1\",\"pages\":\"014424\"},\"PeriodicalIF\":2.4000,\"publicationDate\":\"2025-01-01\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Physical review. E\",\"FirstCategoryId\":\"101\",\"ListUrlMain\":\"https://doi.org/10.1103/PhysRevE.111.014424\",\"RegionNum\":3,\"RegionCategory\":\"物理与天体物理\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q1\",\"JCRName\":\"Mathematics\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Physical review. E","FirstCategoryId":"101","ListUrlMain":"https://doi.org/10.1103/PhysRevE.111.014424","RegionNum":3,"RegionCategory":"物理与天体物理","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q1","JCRName":"Mathematics","Score":null,"Total":0}
引用次数: 0

摘要

第一个原始细胞一定是由一个反应系统驱动的,在这个反应系统中,细胞内部保持着自催化作用,而细胞外的食物分子则没有反应。我们的研究表明,如果存在二级自催化机制,那么在催化剂浓度高的情况下,电池内部的活性状态可以稳定,而环境在没有催化剂的情况下保持稳定的非活性状态。向环境中添加少量催化剂不会引起细胞外自催化循环的启动。相反,对于一级反应机制,加入少量催化剂会在细胞外引发反应,除非催化剂不断从环境中移除。因此,二级反应机制比一级反应机制更能维持原始细胞内外的差异。福尔摩斯反应,虽然是一种似是而非的自催化系统,但它是一级反应,因此不太可能作为支持第一个原始细胞的手段。我们给出了一阶和二阶反应网络的其他理论例子,但注意到很少有已知的现实世界的化学系统适合这些方案。然而,我们发现非酶RNA模板构成了一个二级自催化系统,具有支持原始细胞的必要性质。模板在单元内维护,但不在单元外启动。如果反应是由外部供应的活化核苷酸驱动的,那么模板化本身就是一个代谢循环。在模板化反应发生之前,没有必要进行额外的单独代谢循环。在这种观点下,通常被认为是复制和遗传起源的模板反应,也是新陈代谢的起源。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Maintaining an autocatalytic reaction system in a protocell: Nonenzymatic RNA templating and the link between replication and metabolism.

The first protocells must have been driven by a reaction system in which autocatalysis is maintained inside the cell while food molecules outside the cell are unreactive. We show that if there is a second-order autocatalytic mechanism, then an active state can be stable inside the cell with a high catalyst concentration while the environment remains stable in an unreactive state with no catalyst. Addition of a small amount of catalyst to the environment does not cause the initiation of the autocatalytic cycle outside the cell. In contrast, for a first-order mechanism, addition of a small amount of catalyst initiates the reaction outside the cell unless there is continual removal of the catalyst from the environment. Hence, a second-order reaction mechanism maintains the difference between the inside and outside of a protocell much better than a first-order mechanism. The formose reaction, although a prebiotically plausible autocatalytic system, is first order and therefore is unlikely as a means of support for the first protocells. We give other theoretical examples of first- and second-order reaction networks but note there are few known real-world chemical systems that fit these schemes. However, we show that nonenzymatic RNA templating constitutes a second-order autocatalytic system with the necessary properties to support a protocell. Templating is maintained inside the cell but is not initiated outside the cell. If the reaction is driven by an external supply of activated nucleotides, then templating is itself a metabolic cycle. It is not necessary to have an additional separate metabolic cycle before templating reactions can occur. In this view, templating reactions, which are usually considered as the origin of replication and heredity, are also the origin of metabolism.

求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
Physical review. E
Physical review. E 物理-物理:流体与等离子体
CiteScore
4.60
自引率
16.70%
发文量
0
审稿时长
3.3 months
期刊介绍: Physical Review E (PRE), broad and interdisciplinary in scope, focuses on collective phenomena of many-body systems, with statistical physics and nonlinear dynamics as the central themes of the journal. Physical Review E publishes recent developments in biological and soft matter physics including granular materials, colloids, complex fluids, liquid crystals, and polymers. The journal covers fluid dynamics and plasma physics and includes sections on computational and interdisciplinary physics, for example, complex networks.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术官方微信