太平洋Gypsophila pacifica Kom叶绿体全基因组序列。(石竹科)

IF 0.6 Q4 BIODIVERSITY CONSERVATION

Journal of Asia-Pacific Biodiversity Pub Date : 2024-11-22 DOI:10.1016/j.japb.2024.11.001

Sung Kyung Han, Tae-Im Heo, Byeong-Joo Park, Sung-Hyuk Park, Sang Hoon Che

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引用次数: 0

摘要

太平洋吉普赛。（1916）是一种多年生草本植物，原产于朝鲜、中国和俄罗斯，以观赏和药用价值而闻名。然而，我们对其基因组信息的了解仍然不足。本研究测定了其叶绿体全基因组（cp）序列。pacifica cp基因组长152,827个碱基对，鸟嘌呤-胞嘧啶含量为36.4%。它由83850 bp的大单拷贝区、17329 bp的小单拷贝区和25824 bp的两个反向重复区组成。基因组共鉴定出130个基因，其中蛋白质编码基因85个，rRNA基因8个，tRNA基因37个。最大似然系统发育分析表明，该植物属于石竹属，与石竹属石竹科石竹属石竹有亲缘关系。

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Complete chloroplast genome sequence of Gypsophila pacifica Kom. (Caryophyllaceae)

Gypsophila pacifica Kom. (1916) is a perennial herb native to Korea, China, and Russia, known for its ornamental and medicinal value. However, our understanding of its genomic information remains inadequate. In this study, we determined its complete chloroplast genome (cp) sequence. The cp genome of G. pacifica is 152,827 base pairs (bp) long with a guanine-cytosine content of 36.4%. It consists of a large single-copy region of 83,850 bp, a small single-copy region of 17,329 bp, and two inverted repeat regions of 25,824 bp each. A total of 130 genes were identified in the genome, including 85 protein-coding genes, eight rRNA genes, and 37 tRNA genes. The maximum likelihood phylogenetic analysis revealed that G. pacifica belongs to the Gypsophila group and is closely related to Dianthus within the tribe Caryophylleae.

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来源期刊

Journal of Asia-Pacific Biodiversity Agricultural and Biological Sciences-Insect Science

CiteScore

1.70

自引率

12.50%

发文量

审稿时长

27 days

期刊介绍： The Journal of Asia-Pacific Biodiversity (previous title was Journal of Korean Nature) is an official journal of National Science Museum of Korea (NSMK) and Korea National Arboretum (KNA). The scope of journal is wide and multidisciplinary that publishes original research papers, review articles, as well as conceptual, technical and methodological papers on all aspects of biological diversity-its description, analysis and conservation, and its application by humankind. This wide and multidisciplinary journal aims to provide both scientists and practitioners in conservation theory, policy and management with comprehensive and applicable information. However, papers should not be submitted that deal with microorganisms, except in invited paper. Articles that are focused on the social and economical aspects of biodiversity will be normally not accepted.