一个模拟四吡咯光谱的模块。

IF 2.6 4区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY
Hai Du, Masahiko Taniguchi, James R Diers, Christine Kirmaier, David F Bocian, Jonathan S Lindsey, Dewey Holten
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引用次数: 0

摘要

四吡咯大环包括生命色素(血红素,叶绿素等),并与合成类似物一起在材料化学和生命科学中得到广泛应用。各种宏观循环的不同颜色是基本特征。一种历史悠久的理解电子能谱的方法需要分析分子组成对这些18-π环烯的四个前沿分子轨道(MOs)相对能量的影响。虽然马丁·古特曼教授于1959年首次介绍了四轨道模型,但它的使用在很大程度上是概念性的。本文介绍了一个计算模块(GOUTERMAN),该模块以四种MOs的能量为输入,为用户提供对关键参数(构型相互作用能量、偶极子强度、光谱宽度)的控制,并输出模拟吸收光谱。MOs的能量可以独立计算(例如,从密度泛函理论)或从提供的小型数据库中提取。可以切换MO能量和关键参数,并查看光谱变化。GOUTERMAN模块可在PhotochemCAD中作为专家和非专业人员可视化的工具,通过实践经验,四吡咯发色团的结构和光谱特性之间的联系在自然界中无处不在,并广泛用于研究。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
GOUTERMAN - A module for simulations of tetrapyrrole optical spectra.

Tetrapyrrole macrocycles comprise the pigments of life (heme, chlorophylls, etc.) and together with synthetic analogues also find wide use in materials chemistry and the life sciences. The distinct colors of the various macrocycles are essential features. A time-honored approach for understanding the electronic spectra entails analyzing the impact of molecular composition on the relative energies of the four frontier molecular orbitals (MOs) of these 18-π annulenes. While first introduced by Prof. Martin Gouterman in 1959, use of the four-orbital model has been largely conceptual. Here, a computational module (GOUTERMAN) is introduced that takes as input the energies of the four MOs, provides user control over key parameters (configuration-interaction energies, dipole strengths, spectral widths), and outputs simulated absorption spectra. The energies of the MOs can be calculated independently (e.g., from density functional theory) or drawn from a small database that is provided. The MO energies and key parameters can be toggled and spectral changes viewed. The GOUTERMAN module is available in PhotochemCAD as a tool for both specialists and non-specialists to visualize, via hands-on experience, the connections between the structural and spectral properties of the tetrapyrrole chromophores found ubiquitously in Nature and used widely in research.

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来源期刊
Photochemistry and Photobiology
Photochemistry and Photobiology 生物-生化与分子生物学
CiteScore
6.70
自引率
12.10%
发文量
171
审稿时长
2.7 months
期刊介绍: Photochemistry and Photobiology publishes original research articles and reviews on current topics in photoscience. Topics span from the primary interaction of light with molecules, cells, and tissue to the subsequent biological responses, representing disciplinary and interdisciplinary research in the fields of chemistry, physics, biology, and medicine. Photochemistry and Photobiology is the official journal of the American Society for Photobiology.
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