IF 1.3 3区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY
Louis-Philippe Picard, Dmitry Pichugin, Shuya Kate Huang, Motasem Suleiman, R Scott Prosser
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引用次数: 0

摘要

在氚化背景下的大型蛋白质和稀释自旋系统通常具有质子(1H)自旋晶格弛豫时间(T1)长的特点,这直接影响到循环延迟,进而影响到总的实验时间。二氧(O2)是一种著名的顺磁性物质,其较短的电子自旋-晶格弛豫时间(7.5 ps)有助于高伽马核的有效自旋-晶格弛豫。氧气的化学势和高扩散性也使其能够进入蛋白质的外部和大部分(疏水性)内部。因此,在氧气分压约为 10 bar 时,1H 和 19F 自旋晶格弛豫速率 (R1) 通常达到 3-5 Hz(相比之下,无氧时的速率为 0.7-1.0 Hz),蛋白质 NMR 光谱中的线宽相当。使用氟乙酸脱卤酶(FAcD)(一种 35 kDa 的可溶性同源二聚体酶)、纳米盘稳定的 G 蛋白偶联受体(A2AR)和牛血清白蛋白(BSA)作为测试案例,在 9 bar 下充氧 24 小时后,获取 1H-15 N HSQC 和 19F NMR 图谱的时间节省了 3 倍。正如 15N 标记的 FAcD 中酰胺的 T1 弛豫分析所证明的那样,预计其他自旋扩散效应也会促进溶剂暴露和埋藏质子的 1H 自旋晶格均匀弛豫。最后,我们使用标准 NMR 管证明,在蛋白质样品中,在 9 巴(pO2)下预平衡的溶解氧可在 20° C 或更低温度的溶液中保留 3-4 天,从而避免了在光谱仪中使用专用仪器或高压 NMR 管。既能方便地添加或移除淬灭物种,又能避免在 NMR 实验中使用任何复杂的仪器,这使其成为蛋白质 19F、1H-13 C 和 1H-15 N NMR 研究的实用工具。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Reducing experimental time through spin-lattice relaxation enhancement via dissolved oxygen.

Large proteins and dilute spin systems within a deuterated background are often characterized by long proton (1H) spin-lattice relaxation times (T1), which directly impacts the recycle delay and hence, the total experimental time. Dioxygen (O2) is a well-known paramagnetic species whose short electronic spin-lattice relaxation time (7.5 ps) contributes to effective spin-lattice relaxation of high gamma nuclei. Oxygen's chemical potential and high diffusivity also allows it to access both the protein exterior and much of the (hydrophobic) interior of the protein. Consequently, at O2 partial pressures of ~ 10 bar, 1H and 19F spin-lattice relaxation rates (R1) typically reach 3-5 Hz (versus rates of 0.7-1.0 Hz without oxygen) with comparable line-broadening in protein NMR spectra. Using fluoroacetate dehalogenase (FAcD) a soluble 35 kDa homodimeric enzyme, a nanodisc-stabilized G protein-coupled receptor (A2AR), and bovine serum albumin (BSA) as test cases, a 3-fold savings in time was achieved in acquiring 1H-15 N HSQC and 19F NMR spectra, after oxygenation at 9 bar for 24 h. Additional spin-diffusion effects are anticipated to contribute to uniform 1H spin-lattice relaxation for both solvent-exposed and buried protons, as demonstrated by T1 relaxation analysis of amides in 15N-labeled FAcD. Finally, we show that in protein samples dissolved oxygen pre-equilibrated at 9 bar (pO2) is largely retained in solution at 20° C or lower, using a standard NMR tube for a period of 3-4 days, thus avoiding the use of specialized apparatus or high-pressure NMR tubes in the spectrometer. The convenience of being able to add or remove the quenching species, while avoiding any complex apparatus in the NMR experiment, makes this a practical tool for both 19F, 1H-13 C, and 1H-15 N NMR studies of proteins.

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来源期刊
Journal of Biomolecular NMR
Journal of Biomolecular NMR 生物-光谱学
CiteScore
6.00
自引率
3.70%
发文量
19
审稿时长
6-12 weeks
期刊介绍: The Journal of Biomolecular NMR provides a forum for publishing research on technical developments and innovative applications of nuclear magnetic resonance spectroscopy for the study of structure and dynamic properties of biopolymers in solution, liquid crystals, solids and mixed environments, e.g., attached to membranes. This may include: Three-dimensional structure determination of biological macromolecules (polypeptides/proteins, DNA, RNA, oligosaccharides) by NMR. New NMR techniques for studies of biological macromolecules. Novel approaches to computer-aided automated analysis of multidimensional NMR spectra. Computational methods for the structural interpretation of NMR data, including structure refinement. Comparisons of structures determined by NMR with those obtained by other methods, e.g. by diffraction techniques with protein single crystals. New techniques of sample preparation for NMR experiments (biosynthetic and chemical methods for isotope labeling, preparation of nutrients for biosynthetic isotope labeling, etc.). An NMR characterization of the products must be included.
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