“黑暗中的光”：深海棘鳗（Notacanthus, Notacanthiformes）的首个转录组学数据

IF 1.3 4区生物学 Q4 GENETICS & HEREDITY

Marine genomics Pub Date : 2025-02-18 DOI:10.1016/j.margen.2025.101182

André Gomes-dos-Santos , André M. Machado , Francisco Baldó , Juan Carlos Arronte , L. Filipe C. Castro , David Barros-García

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引用次数: 0

摘要

该属包括分布在世界各地的深海鱼类。尽管有一些有趣的生态特征和它们作为鳗鱼亲戚的有趣的系统发育位置，但目前没有转录组学，基因组学或蛋白质组学资源。在这里，我们展示了两种不同的Notacanthus物种的大脑和眼睛转录组：短鳍刺鳝Notacanthus bonaparte （Risso, 1840）和N. arrontei （Bañón et al., 2024）。还提供了转录本的功能注释。这些新数据集将为今后对深海深海深海鱼类群落的研究提供有价值的数据。

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A “light in the darkness”: First transcriptomic data from deep-sea spiny eels (Notacanthus, Notacanthiformes)

The genus Notacanthus comprises worldwide distributed bathypelagic deep-sea fish species. Despite several interesting ecological traits and their interesting phylogenetic position as relatives of eels, no transcriptomic, genomic, or proteomic resources are currently available. Here, we present a brain and eye transcriptome for two different notacanthid species: the shortfin spiny eel Notacanthus bonaparte (Risso, 1840) and N. arrontei (Bañón et al., 2024). Functional annotation of the transcripts is also provided. These novel datasets will be valuable for future studies on notacanthid fish and the deep-sea bathypelagic fish community.

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来源期刊

Marine genomics 生物-遗传学

CiteScore

3.60

自引率

5.30%

发文量

审稿时长

29 days

期刊介绍： The journal publishes papers on all functional and evolutionary aspects of genes, chromatin, chromosomes and (meta)genomes of marine (and freshwater) organisms. It deals with new genome-enabled insights into the broader framework of environmental science. Topics within the scope of this journal include: • Population genomics and ecology • Evolutionary and developmental genomics • Comparative genomics • Metagenomics • Environmental genomics • Systems biology More specific topics include: geographic and phylogenomic characterization of aquatic organisms, metabolic capacities and pathways of organisms and communities, biogeochemical cycles, genomics and integrative approaches applied to microbial ecology including (meta)transcriptomics and (meta)proteomics, tracking of infectious diseases, environmental stress, global climate change and ecosystem modelling.