全球肌肉瘤的基因组是否编码丰富的碳水化合物活性酶基因库?

IF 2.6 2区 生物学 Q2 MYCOLOGY
Mycologia Pub Date : 2025-03-01 Epub Date: 2025-02-10 DOI:10.1080/00275514.2025.2452305
Takashi Baba, Ryo Hagiuda, Hiromi Matsumae, Dai Hirose
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引用次数: 0

摘要

地理舌菌目(地理舌菌目,子囊菌目)的生活方式在很大程度上仍然是未知的。最近的观察支持ericoid菌根的生活方式,特别是在培养的肌癣菌相关物种中。然而,与众所周知的ericoid菌根真菌中丰富的CAZyme库相比,目前已知的geoglossoid真菌基因组在Pezizomycotina中编码较少的碳水化合物活性酶(CAZymes)。缺乏培养的地舌菌的组装基因组阻碍了我们对与其生活方式相关的基因组特征的理解。我们假设,作为一种假定的菌根真菌,glosarcoleotia的基因组编码丰富的酶,这与它的可培养性是一致的。全球S. globosa菌株NBRC 116039的基因组与其他地舌虫基因组具有较小的基因组大小和较少的基因数量等一般特征。然而,前者具有最广泛的酶库,有几个酶家族参与植物细胞壁降解。其中一些cazyme在地舌鼠和密切相关的谱系中没有发现。尽管如此,球孢菌根真菌中CAZymes的数量明显少于以往报道的ericoid菌根真菌。这种不一致性可能不仅突出了类根分枝菌之间的生态生理差异,而且还突出了地理舌孢菌生活方式的特定进化。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Does the genome of Sarcoleotia globosa encode a rich carbohydrate-active enzyme gene repertoire?

The lifestyles of the order Geoglossales (Geoglossomycetes, Ascomycota) remain largely unknown. Recent observations support ericoid mycorrhizal lifestyles, especially in cultured Sarcoleotia-related species. However, the currently known genomes of geoglossoid fungi encode fewer carbohydrate-active enzymes (CAZymes) in Pezizomycotina, in contrast to the abundant CAZyme repertoires found in well-known ericoid mycorrhizal fungi. The absence of assembled genomes for cultured geoglossoid fungi hinders our understanding of the genomic features related to their lifestyles. We hypothesize that the genome of Sarcoleotia globosa, a putative ericoid mycorrhizal fungus, encodes abundant CAZymes, consistent with its culturability. General features, such as smaller genome size and smaller number of genes, are shared between the genome of S. globosa strain NBRC 116039 and other geoglossalean genomes. However, the former had the most extensive CAZyme repertoire, with several enzyme families involved in plant cell wall degradation. Some of these CAZymes are not found in Geoglossales and closely related lineages. Nonetheless, the number of CAZymes from S. globosa was notably smaller than that previously reported in ericoid mycorrhizal fungi. This inconsistency may highlight not only ecophysiological variation among ericoid root mycobionts but also the specific evolution of lifestyles in Geoglossales.

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来源期刊
Mycologia
Mycologia 生物-真菌学
CiteScore
6.20
自引率
3.60%
发文量
56
审稿时长
4-8 weeks
期刊介绍: International in coverage, Mycologia presents recent advances in mycology, emphasizing all aspects of the biology of Fungi and fungus-like organisms, including Lichens, Oomycetes and Slime Molds. The Journal emphasizes subjects including applied biology, biochemistry, cell biology, development, ecology, evolution, genetics, genomics, molecular biology, morphology, new techniques, animal or plant pathology, phylogenetics, physiology, aspects of secondary metabolism, systematics, and ultrastructure. In addition to research articles, reviews and short notes, Mycologia also includes invited papers based on presentations from the Annual Conference of the Mycological Society of America, such as Karling Lectures or Presidential Addresses.
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