对基于废水的流行病学进行数学评估,以预测迈阿密-戴德县的 SARS-CoV-2 病例和住院人数

IF 1.4 4区 生物学 Q4 MATHEMATICAL & COMPUTATIONAL BIOLOGY
Binod Pant, Salman Safdar, Calistus N. Ngonghala, Abba B. Gumel
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引用次数: 0

摘要

本研究提出了一个基于废水的数学模型,用于评估佛罗里达州迈阿密-戴德县SARS-CoV-2大流行的传播动力学。该模型采用非线性微分方程的确定性系统的形式,监测疾病的时间动态,以及该县污水系统(由三个污水处理厂组成)中病毒RNA浓度的变化。该模型使用迈阿密-戴德市第三波SARS-CoV-2大流行期间的废水数据(具体而言,从2021年7月3日至2021年10月9日)进行校准。利用校正后的模型预测了该县在上述时间段内的SARS-CoV-2病例和住院趋势,结果表明,每周观测(检测)病例数据与校正后模型预测的相应每周数据具有较强的相关性。该模型对模拟期间该县记录最多SARS-CoV-2病例数的一周的预测与记录最多观察/报告病例的时间(2021年8月14日)精确匹配。此外,该模型预测的2021年8月14日当周最大病例数比该日该县每周最大观察病例数高约15倍(即模型估计的最大病例数比实际/观察到的确诊病例数高15倍)。这一结果与文献中许多SARS-CoV-2建模研究(包括其他基于废水的建模以及统计模型)的结果一致。此外,该模型准确预测了迈阿密戴德研究期间每周COVID-19病例高峰与住院数据之间的一周滞后,模型预测的住院高峰出现在2021年8月21日。进行了详细的时变全局敏感性分析,以确定对所选响应函数-废水中累积病毒载量影响最大的参数(废水基、流行病学和生物学)。分析发现,在整个研究期间,感染个体的传播率、感染个体的脱落率、感染个体的恢复率、人均单位时间的平均粪便负荷以及在污水处理厂测量前未丢失在污水中的脱落病毒RNA的比例对响应函数影响最大。该研究最终表明,废水监测数据可以成为衡量(即提供预警信号和当前负担)和预测社区新发和再发传染病(如SARS-CoV-2)的未来轨迹和负担(如病例数和住院人数)的非常有力的指标。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Mathematical Assessment of Wastewater-Based Epidemiology to Predict SARS-CoV-2 Cases and Hospitalizations in Miami-Dade County

This study presents a wastewater-based mathematical model for assessing the transmission dynamics of the SARS-CoV-2 pandemic in Miami-Dade County, Florida. The model, which takes the form of a deterministic system of nonlinear differential equations, monitors the temporal dynamics of the disease, as well as changes in viral RNA concentration in the county’s wastewater system (which consists of three sewage treatment plants). The model was calibrated using the wastewater data during the third wave of the SARS-CoV-2 pandemic in Miami-Dade (specifically, the time period from July 3, 2021 to October 9, 2021). The calibrated model was used to predict SARS-CoV-2 case and hospitalization trends in the county during the aforementioned time period, showing a strong correlation between the observed (detected) weekly case data and the corresponding weekly data predicted by the calibrated model. The model’s prediction of the week when maximum number of SARS-CoV-2 cases will be recorded in the county during the simulation period precisely matches the time when the maximum observed/reported cases were recorded (which was August 14, 2021). Furthermore, the model’s projection of the maximum number of cases for the week of August 14, 2021 is about 15 times higher than the maximum observed weekly case count for the county on that day (i.e., the maximum case count estimated by the model was 15 times higher than the actual/observed count for confirmed cases). This result is consistent with the result of numerous SARS-CoV-2 modeling studies (including other wastewater-based modeling, as well as statistical models) in the literature. Furthermore, the model accurately predicts a one-week lag between the peak in weekly COVID-19 case and hospitalization data during the time period of the study in Miami-Dade, with the model-predicted hospitalizations peaking on August 21, 2021. Detailed time-varying global sensitivity analysis was carried out to determine the parameters (wastewater-based, epidemiological and biological) that have the most influence on the chosen response function—the cumulative viral load in the wastewater. This analysis revealed that the transmission rate of infectious individuals, shedding rate of infectious individuals, recovery rate of infectious individuals, average fecal load per person per unit time and the proportion of shed viral RNA that is not lost in sewage before measurement at the wastewater treatment plant were most influential to the response function during the entire time period of the study. This study shows, conclusively, that wastewater surveillance data can be a very powerful indicator for measuring (i.e., providing early-warning signal and current burden) and predicting the future trajectory and burden (e.g., number of cases and hospitalizations) of emerging and re-emerging infectious diseases, such as SARS-CoV-2, in a community.

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来源期刊
Acta Biotheoretica
Acta Biotheoretica 生物-生物学
CiteScore
2.70
自引率
7.70%
发文量
19
审稿时长
3 months
期刊介绍: Acta Biotheoretica is devoted to the promotion of theoretical biology, encompassing mathematical biology and the philosophy of biology, paying special attention to the methodology of formation of biological theory. Papers on all kind of biological theories are welcome. Interesting subjects include philosophy of biology, biomathematics, computational biology, genetics, ecology and morphology. The process of theory formation can be presented in verbal or mathematical form. Moreover, purely methodological papers can be devoted to the historical origins of the philosophy underlying biological theories and concepts. Papers should contain clear statements of biological assumptions, and where applicable, a justification of their translation into mathematical form and a detailed discussion of the mathematical treatment. The connection to empirical data should be clarified. Acta Biotheoretica also welcomes critical book reviews, short comments on previous papers and short notes directing attention to interesting new theoretical ideas.
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