James L. Suter, Werner A. Müller, Maxime Vassaux, Alexandros Anastasiou, Martin Simmons, David Tilbrook and Peter V. Coveney*,
{"title":"基于分子动力学模拟的玻璃化转变温度的快速、准确和可重复性预测","authors":"James L. Suter, Werner A. Müller, Maxime Vassaux, Alexandros Anastasiou, Martin Simmons, David Tilbrook and Peter V. Coveney*, ","doi":"10.1021/acs.jctc.4c0136410.1021/acs.jctc.4c01364","DOIUrl":null,"url":null,"abstract":"<p >For the computational design of new polymeric materials, accurate methods for determining the glass transition temperature (<i>T</i><sub>g</sub>) are required. We apply an ensemble approach in molecular dynamics (MD) and examine its predictions of <i>T</i><sub>g</sub> and their associated uncertainty. We separate the uncertainty into the aleatoric contributions arising from dynamical chaos and that due to the computational scenarios chosen to compute <i>T</i><sub>g</sub>. We propose a new scenario for computing <i>T</i><sub>g</sub>, where the density–temperature behavior is computed by running all temperatures concurrently, rather than invoking a sequential approach, thereby significantly reducing wall-clock time from days to several hours without increasing the aleatoric uncertainty. On comparing concurrent and sequential scenarios on six highly cross-linked epoxy resins cured with aromatic amines, we find excellent agreement with our experimentally determined <i>T</i><sub>g</sub> using dynamical mechanical analysis for both scenarios. The confidence intervals are found to scale as <i>N</i><sup>–0.5</sup>, where <i>N</i> is the number of members in the ensemble, implying that ensembles comprised of at least ten replicas are required to predict <i>T</i><sub>g</sub> using MD with 95% confidence intervals of less than 20 K. The optimal MD simulation protocol is 4 ns of burn-in time followed by 2 ns of production run time.</p>","PeriodicalId":45,"journal":{"name":"Journal of Chemical Theory and Computation","volume":"21 3","pages":"1405–1421 1405–1421"},"PeriodicalIF":5.5000,"publicationDate":"2025-01-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://pubs.acs.org/doi/epdf/10.1021/acs.jctc.4c01364","citationCount":"0","resultStr":"{\"title\":\"Rapid, Accurate and Reproducible Prediction of the Glass Transition Temperature Using Ensemble-Based Molecular Dynamics Simulation\",\"authors\":\"James L. Suter, Werner A. Müller, Maxime Vassaux, Alexandros Anastasiou, Martin Simmons, David Tilbrook and Peter V. Coveney*, \",\"doi\":\"10.1021/acs.jctc.4c0136410.1021/acs.jctc.4c01364\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p >For the computational design of new polymeric materials, accurate methods for determining the glass transition temperature (<i>T</i><sub>g</sub>) are required. We apply an ensemble approach in molecular dynamics (MD) and examine its predictions of <i>T</i><sub>g</sub> and their associated uncertainty. We separate the uncertainty into the aleatoric contributions arising from dynamical chaos and that due to the computational scenarios chosen to compute <i>T</i><sub>g</sub>. We propose a new scenario for computing <i>T</i><sub>g</sub>, where the density–temperature behavior is computed by running all temperatures concurrently, rather than invoking a sequential approach, thereby significantly reducing wall-clock time from days to several hours without increasing the aleatoric uncertainty. On comparing concurrent and sequential scenarios on six highly cross-linked epoxy resins cured with aromatic amines, we find excellent agreement with our experimentally determined <i>T</i><sub>g</sub> using dynamical mechanical analysis for both scenarios. The confidence intervals are found to scale as <i>N</i><sup>–0.5</sup>, where <i>N</i> is the number of members in the ensemble, implying that ensembles comprised of at least ten replicas are required to predict <i>T</i><sub>g</sub> using MD with 95% confidence intervals of less than 20 K. 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Rapid, Accurate and Reproducible Prediction of the Glass Transition Temperature Using Ensemble-Based Molecular Dynamics Simulation
For the computational design of new polymeric materials, accurate methods for determining the glass transition temperature (Tg) are required. We apply an ensemble approach in molecular dynamics (MD) and examine its predictions of Tg and their associated uncertainty. We separate the uncertainty into the aleatoric contributions arising from dynamical chaos and that due to the computational scenarios chosen to compute Tg. We propose a new scenario for computing Tg, where the density–temperature behavior is computed by running all temperatures concurrently, rather than invoking a sequential approach, thereby significantly reducing wall-clock time from days to several hours without increasing the aleatoric uncertainty. On comparing concurrent and sequential scenarios on six highly cross-linked epoxy resins cured with aromatic amines, we find excellent agreement with our experimentally determined Tg using dynamical mechanical analysis for both scenarios. The confidence intervals are found to scale as N–0.5, where N is the number of members in the ensemble, implying that ensembles comprised of at least ten replicas are required to predict Tg using MD with 95% confidence intervals of less than 20 K. The optimal MD simulation protocol is 4 ns of burn-in time followed by 2 ns of production run time.
期刊介绍:
The Journal of Chemical Theory and Computation invites new and original contributions with the understanding that, if accepted, they will not be published elsewhere. Papers reporting new theories, methodology, and/or important applications in quantum electronic structure, molecular dynamics, and statistical mechanics are appropriate for submission to this Journal. Specific topics include advances in or applications of ab initio quantum mechanics, density functional theory, design and properties of new materials, surface science, Monte Carlo simulations, solvation models, QM/MM calculations, biomolecular structure prediction, and molecular dynamics in the broadest sense including gas-phase dynamics, ab initio dynamics, biomolecular dynamics, and protein folding. The Journal does not consider papers that are straightforward applications of known methods including DFT and molecular dynamics. The Journal favors submissions that include advances in theory or methodology with applications to compelling problems.