基于分子动力学模拟的玻璃化转变温度的快速、准确和可重复性预测

IF 5.5 1区 化学 Q2 CHEMISTRY, PHYSICAL
James L. Suter, Werner A. Müller, Maxime Vassaux, Alexandros Anastasiou, Martin Simmons, David Tilbrook and Peter V. Coveney*, 
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引用次数: 0

摘要

对于新型高分子材料的计算设计,需要精确的方法来确定玻璃化转变温度(Tg)。我们在分子动力学(MD)中应用了一种集成方法,并研究了其对Tg的预测及其相关的不确定性。我们将不确定性分为由动态混沌引起的任意贡献和由于选择计算Tg的计算场景引起的任意贡献。我们提出了一种计算Tg的新方案,其中通过同时运行所有温度来计算密度-温度行为,而不是调用顺序方法,从而显着将时钟时间从几天减少到几个小时,而不会增加任意不确定性。在比较六种芳香胺固化的高交联环氧树脂的并发和顺序情况时,我们发现两种情况下使用动态力学分析实验确定的Tg与我们的结果非常吻合。发现置信区间为N - 0.5,其中N是集合中成员的数量,这意味着需要由至少10个副本组成的集合使用MD预测Tg, 95%置信区间小于20 K。最优的MD仿真协议是4 ns的老化时间,然后是2 ns的生产运行时间。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Rapid, Accurate and Reproducible Prediction of the Glass Transition Temperature Using Ensemble-Based Molecular Dynamics Simulation

For the computational design of new polymeric materials, accurate methods for determining the glass transition temperature (Tg) are required. We apply an ensemble approach in molecular dynamics (MD) and examine its predictions of Tg and their associated uncertainty. We separate the uncertainty into the aleatoric contributions arising from dynamical chaos and that due to the computational scenarios chosen to compute Tg. We propose a new scenario for computing Tg, where the density–temperature behavior is computed by running all temperatures concurrently, rather than invoking a sequential approach, thereby significantly reducing wall-clock time from days to several hours without increasing the aleatoric uncertainty. On comparing concurrent and sequential scenarios on six highly cross-linked epoxy resins cured with aromatic amines, we find excellent agreement with our experimentally determined Tg using dynamical mechanical analysis for both scenarios. The confidence intervals are found to scale as N–0.5, where N is the number of members in the ensemble, implying that ensembles comprised of at least ten replicas are required to predict Tg using MD with 95% confidence intervals of less than 20 K. The optimal MD simulation protocol is 4 ns of burn-in time followed by 2 ns of production run time.

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来源期刊
Journal of Chemical Theory and Computation
Journal of Chemical Theory and Computation 化学-物理:原子、分子和化学物理
CiteScore
9.90
自引率
16.40%
发文量
568
审稿时长
1 months
期刊介绍: The Journal of Chemical Theory and Computation invites new and original contributions with the understanding that, if accepted, they will not be published elsewhere. Papers reporting new theories, methodology, and/or important applications in quantum electronic structure, molecular dynamics, and statistical mechanics are appropriate for submission to this Journal. Specific topics include advances in or applications of ab initio quantum mechanics, density functional theory, design and properties of new materials, surface science, Monte Carlo simulations, solvation models, QM/MM calculations, biomolecular structure prediction, and molecular dynamics in the broadest sense including gas-phase dynamics, ab initio dynamics, biomolecular dynamics, and protein folding. The Journal does not consider papers that are straightforward applications of known methods including DFT and molecular dynamics. The Journal favors submissions that include advances in theory or methodology with applications to compelling problems.
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