拟寄生蜂杨梅Leptopilina myrica的染色体水平基因组测序和组装。

IF 6.9 2区 综合性期刊 Q1 MULTIDISCIPLINARY SCIENCES
Zhi Dong, Zixuan Xu, Junwei Zhang, Yulong Guo, Qichao Zhang, Lan Pang, Ting Feng, Wenqi Shi, Yifeng Sheng, Jianhua Huang, Jiani Chen
{"title":"拟寄生蜂杨梅Leptopilina myrica的染色体水平基因组测序和组装。","authors":"Zhi Dong, Zixuan Xu, Junwei Zhang, Yulong Guo, Qichao Zhang, Lan Pang, Ting Feng, Wenqi Shi, Yifeng Sheng, Jianhua Huang, Jiani Chen","doi":"10.1038/s41597-025-04577-w","DOIUrl":null,"url":null,"abstract":"<p><p>Leptopilina wasps are crucial for biological pest control, particularly against the globally emerging pest Drosophila suzukii. Despite their ecological significance, the genomic basis of host selection and parasitism in this genus remains underexplored. In this study, we assembled a high-quality, chromosome-level genome of Leptopilina myrica, a species collected in Taizhou, Zhejiang Province, China. We employed a combination of PacBio long-read sequencing, Illumina short-read sequencing, and Hi-C technology to produce a genome assembly of approximately 462.30 Mb, with a scaffold N50 of 47.32 Mb and a contig N50 of 4.07 Mb. By comparing the protein-coding genes of L. myrica with those of other Hymenoptera species, we gained insights into the evolutionary history of parasitoid wasps. This high-quality genome will provide a foundation for future research on the genetic and functional traits of parasitoid wasps, shedding light on the evolutionary dynamics of host-parasite interactions. The genome of L. myrica provides a valuable resource for future studies on host-parasite interactions and the genetic basis of parasitoid wasp biology.</p>","PeriodicalId":21597,"journal":{"name":"Scientific Data","volume":"12 1","pages":"235"},"PeriodicalIF":6.9000,"publicationDate":"2025-02-08","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11807108/pdf/","citationCount":"0","resultStr":"{\"title\":\"Chromosome-level genome sequencing and assembly of the parasitoid wasp Leptopilina myrica.\",\"authors\":\"Zhi Dong, Zixuan Xu, Junwei Zhang, Yulong Guo, Qichao Zhang, Lan Pang, Ting Feng, Wenqi Shi, Yifeng Sheng, Jianhua Huang, Jiani Chen\",\"doi\":\"10.1038/s41597-025-04577-w\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p>Leptopilina wasps are crucial for biological pest control, particularly against the globally emerging pest Drosophila suzukii. Despite their ecological significance, the genomic basis of host selection and parasitism in this genus remains underexplored. In this study, we assembled a high-quality, chromosome-level genome of Leptopilina myrica, a species collected in Taizhou, Zhejiang Province, China. We employed a combination of PacBio long-read sequencing, Illumina short-read sequencing, and Hi-C technology to produce a genome assembly of approximately 462.30 Mb, with a scaffold N50 of 47.32 Mb and a contig N50 of 4.07 Mb. By comparing the protein-coding genes of L. myrica with those of other Hymenoptera species, we gained insights into the evolutionary history of parasitoid wasps. This high-quality genome will provide a foundation for future research on the genetic and functional traits of parasitoid wasps, shedding light on the evolutionary dynamics of host-parasite interactions. The genome of L. myrica provides a valuable resource for future studies on host-parasite interactions and the genetic basis of parasitoid wasp biology.</p>\",\"PeriodicalId\":21597,\"journal\":{\"name\":\"Scientific Data\",\"volume\":\"12 1\",\"pages\":\"235\"},\"PeriodicalIF\":6.9000,\"publicationDate\":\"2025-02-08\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11807108/pdf/\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Scientific Data\",\"FirstCategoryId\":\"103\",\"ListUrlMain\":\"https://doi.org/10.1038/s41597-025-04577-w\",\"RegionNum\":2,\"RegionCategory\":\"综合性期刊\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q1\",\"JCRName\":\"MULTIDISCIPLINARY SCIENCES\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Scientific Data","FirstCategoryId":"103","ListUrlMain":"https://doi.org/10.1038/s41597-025-04577-w","RegionNum":2,"RegionCategory":"综合性期刊","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q1","JCRName":"MULTIDISCIPLINARY SCIENCES","Score":null,"Total":0}
引用次数: 0

摘要

瘦螺旋体黄蜂对生物害虫防治至关重要,特别是对全球新兴害虫铃木果蝇。尽管具有重要的生态意义,但寄主选择和寄生的基因组基础仍未得到充分研究。在这项研究中,我们组装了一个高质量的、染色体水平的杨梅Leptopilina myrica基因组,该物种采集于中国浙江省台州。我们采用PacBio长读测序、Illumina短读测序和Hi-C技术相结合的方法,得到了一个约462.30 Mb的基因组组装体,其中支架N50为47.32 Mb, contig N50为4.07 Mb。通过与其他膜翅目昆虫的蛋白质编码基因比较,我们对拟寄生蜂的进化史有了更深入的了解。这一高质量的基因组将为进一步研究拟寄生蜂的遗传和功能特性奠定基础,揭示寄主-寄生虫相互作用的进化动力学。杨梅的基因组为进一步研究寄主-寄生虫相互作用和拟寄生蜂生物学的遗传基础提供了宝贵的资源。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

Chromosome-level genome sequencing and assembly of the parasitoid wasp Leptopilina myrica.

Chromosome-level genome sequencing and assembly of the parasitoid wasp Leptopilina myrica.

Chromosome-level genome sequencing and assembly of the parasitoid wasp Leptopilina myrica.

Chromosome-level genome sequencing and assembly of the parasitoid wasp Leptopilina myrica.

Leptopilina wasps are crucial for biological pest control, particularly against the globally emerging pest Drosophila suzukii. Despite their ecological significance, the genomic basis of host selection and parasitism in this genus remains underexplored. In this study, we assembled a high-quality, chromosome-level genome of Leptopilina myrica, a species collected in Taizhou, Zhejiang Province, China. We employed a combination of PacBio long-read sequencing, Illumina short-read sequencing, and Hi-C technology to produce a genome assembly of approximately 462.30 Mb, with a scaffold N50 of 47.32 Mb and a contig N50 of 4.07 Mb. By comparing the protein-coding genes of L. myrica with those of other Hymenoptera species, we gained insights into the evolutionary history of parasitoid wasps. This high-quality genome will provide a foundation for future research on the genetic and functional traits of parasitoid wasps, shedding light on the evolutionary dynamics of host-parasite interactions. The genome of L. myrica provides a valuable resource for future studies on host-parasite interactions and the genetic basis of parasitoid wasp biology.

求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
Scientific Data
Scientific Data Social Sciences-Education
CiteScore
11.20
自引率
4.10%
发文量
689
审稿时长
16 weeks
期刊介绍: Scientific Data is an open-access journal focused on data, publishing descriptions of research datasets and articles on data sharing across natural sciences, medicine, engineering, and social sciences. Its goal is to enhance the sharing and reuse of scientific data, encourage broader data sharing, and acknowledge those who share their data. The journal primarily publishes Data Descriptors, which offer detailed descriptions of research datasets, including data collection methods and technical analyses validating data quality. These descriptors aim to facilitate data reuse rather than testing hypotheses or presenting new interpretations, methods, or in-depth analyses.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:604180095
Book学术官方微信