高数据速率大分子晶体学(HDRMX)的大量压缩:对衍射数据和后续结构分析的影响。

IF 2.5 3区 物理与天体物理
Journal of Synchrotron Radiation Pub Date : 2025-03-01 Epub Date: 2025-02-06 DOI:10.1107/S1600577525000396
Herbert J Bernstein, Alexei S Soares, Kimberly Horvat, Jean Jakoncic
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引用次数: 0

摘要

新的高计数率,集成,大面积x射线探测器,帧率高达每秒17400张图像,开始可用。这些将很快用于专门的大分子晶体学实验,但将需要最佳的有损压缩算法,使系统能够跟上数据吞吐量。一些信息可能会丢失。我们能否在对结构信息产生可接受的影响的情况下将这种损失最小化?为了探索这个问题,我们考虑了几种方法:对短序列图像求和,开始创建更大像素的效果,使用JPEG-2000有损小波压缩,以及使用Hcompress,这是一种借鉴于天文学的基于haar小波的有损压缩。我们还探讨了将求和、分组和Hcompress或JPEG-2000结合使用的效果。在最后两种方法中,您可以指定希望将结果从初始文件大小压缩多少。这些提供了特别有效的有损压缩,保留了布拉格反射结构解的基本信息。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Massive compression for high data rate macromolecular crystallography (HDRMX): impact on diffraction data and subsequent structural analysis.

New higher-count-rate, integrating, large-area X-ray detectors with framing rates as high as 17400 images per second are beginning to be available. These will soon be used for specialized macromolecular crystallography experiments but will require optimal lossy compression algorithms to enable systems to keep up with data throughput. Some information may be lost. Can we minimize this loss with acceptable impact on structural information? To explore this question, we have considered several approaches: summing short sequences of images, binning to create the effect of larger pixels, use of JPEG-2000 lossy wavelet-based compression, and use of Hcompress, which is a Haar-wavelet-based lossy compression borrowed from astronomy. We also explore the effect of the combination of summing, binning, and Hcompress or JPEG-2000. In each of these last two methods one can specify approximately how much one wants the result to be compressed from the starting file size. These provide particularly effective lossy compressions that retain essential information for structure solution from Bragg reflections.

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来源期刊
Journal of Synchrotron Radiation
Journal of Synchrotron Radiation INSTRUMENTS & INSTRUMENTATIONOPTICS&-OPTICS
CiteScore
5.60
自引率
12.00%
发文量
289
审稿时长
1 months
期刊介绍: Synchrotron radiation research is rapidly expanding with many new sources of radiation being created globally. Synchrotron radiation plays a leading role in pure science and in emerging technologies. The Journal of Synchrotron Radiation provides comprehensive coverage of the entire field of synchrotron radiation and free-electron laser research including instrumentation, theory, computing and scientific applications in areas such as biology, nanoscience and materials science. Rapid publication ensures an up-to-date information resource for scientists and engineers in the field.
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