参数化重置模型捕获剂量依赖性小鼠生物钟的干扰

IF 15.7 1区 综合性期刊 Q1 MULTIDISCIPLINARY SCIENCES
Kosaku Masuda, Ryusuke Yoshimoto, Ruoshi Li, Takeshi Sakurai, Arisa Hirano
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引用次数: 0

摘要

相响应曲线(PRC)反映了内外刺激后昼夜节律相位随时间的变化。然而,由于其形状随刺激强度的变化而变化,这种时间依赖性使PRC的测量和量化复杂化。我们之前的工作表明,重置一个不同步的生物钟(奇点响应,SR)通过只需要振幅和相位参数来简化分析。在本研究中,我们通过将prc转换为SR参数,构建了小鼠生物钟相位重置的综合模型。我们分析了单细胞prc,发现不同刺激浓度下的SR振幅参数遵循Hill方程。此外,该模型通过简单地增加或减少单个SR参数来预测多种刺激和预处理(背景)对相位响应的综合影响。在小鼠细胞和组织中进行SR测量的实验验证证实了该模型的准确性。该研究表明,SR有助于PRC量化,并揭示了使用SR参数在各种条件下控制相复位特性的简单规则。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

Parameterized resetting model captures dose-dependent entrainment of the mouse circadian clock

Parameterized resetting model captures dose-dependent entrainment of the mouse circadian clock

The phase response curve (PRC) represents the time-dependent changes in circadian rhythm phase following internal or external stimuli. However, this time dependence complicates PRC measurement and quantification owing to its variable shape with changing stimulus intensity. Our previous work demonstrated that resetting a desynchronized circadian clock (singularity response, SR) simplifies the analysis by requiring only amplitude and phase parameters. In this study, we construct a comprehensive model for phase resetting in the mouse circadian clock by converting PRCs into SR parameters. We analyze single-cell PRCs and show that the SR amplitude parameters for different stimulus concentrations follow the Hill equation. Additionally, the model predicts the combined effects of multiple stimuli and pre-treatment (background) on phase response by simple addition or subtraction of individual SR parameters. Experimental validation using SR measurements in mouse cells and tissues confirms the model’s accuracy. This study demonstrates that SRs facilitate PRC quantification and reveal simple rules governing phase resetting properties under various conditions using SR parameters.

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来源期刊
Nature Communications
Nature Communications Biological Science Disciplines-
CiteScore
24.90
自引率
2.40%
发文量
6928
审稿时长
3.7 months
期刊介绍: Nature Communications, an open-access journal, publishes high-quality research spanning all areas of the natural sciences. Papers featured in the journal showcase significant advances relevant to specialists in each respective field. With a 2-year impact factor of 16.6 (2022) and a median time of 8 days from submission to the first editorial decision, Nature Communications is committed to rapid dissemination of research findings. As a multidisciplinary journal, it welcomes contributions from biological, health, physical, chemical, Earth, social, mathematical, applied, and engineering sciences, aiming to highlight important breakthroughs within each domain.
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