化学动力学机制自动分析中的短暂敏感性

IF 1.5 4区 化学 Q4 CHEMISTRY, PHYSICAL
Matthew S. Johnson, Charles J. McGill, William H. Green
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引用次数: 0

摘要

详细的化学动力学机制是解决许多重要化学过程的必要条件。随着小分子的化学研究越来越有基础,量子化学计算也越来越便宜,动力学家们开始对构建越来越大的动力学机制来模拟越来越复杂的化学过程感兴趣。事实证明,这些大型的动力学机制难以完善,解释起来也非常耗时。对大型机构进行传统的灵敏度分析,如果没有专门的技术来降低计算成本,可能不方便,甚至几乎不可能。本文首先提出了一种新的时间-局部灵敏度分析方法——暂态灵敏度分析。瞬态灵敏度分析在一个例子中被证明能够以比传统灵敏度快18000倍的速度准确地识别传统敏感反应。通过将暂态灵敏度分析与更传统的时间局部分支、路径和聚类分析相融合,我们开发了一种高效的自动机制分析算法。这种自动机制分析在一个时间点上能够识别目标最敏感的反应,然后使用分支,途径和聚类分析提出为什么反应可能敏感的假设。我们在反应机制模拟器(RMS)包中实现这些算法,使我们能够以高度可读的文本格式和分子通量图报告自动机制分析结果。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

Transitory sensitivity in automatic chemical kinetic mechanism analysis

Transitory sensitivity in automatic chemical kinetic mechanism analysis

Detailed chemical kinetic mechanisms are necessary for resolving many important chemical processes. As the chemistry of smaller molecules has become better grounded and quantum chemistry calculations have become cheaper, kineticists have become interested in constructing progressively larger kinetic mechanisms to model increasingly complex chemical processes. These large kinetic mechanisms prove incredibly difficult to refine and time-consuming to interpret. Traditional sensitivity analysis on a large mechanism can range from inconvenient to practically impossible without special techniques to reduce the computational cost. We first present a new time-local sensitivity analysis we term transitory sensitivity analysis. Transitory sensitivity analysis is demonstrated in an example to accurately identify traditionally sensitive reactions at an 18,000x speed up over traditional sensitivities. By fusing transitory sensitivity analysis with more traditional time-local branching, pathway, and cluster analyses, we develop an algorithm for efficient automatic mechanism analysis. This automatic mechanism analysis at a time point is able to identify the reactions a target is most sensitive to using transitory sensitivity analysis and then propose hypotheses why the reaction might be sensitive using branching, pathway, and cluster analyses. We implement these algorithms within the reaction mechanism simulator (RMS) package, which enables us to report the automatic mechanism analysis results in highly readable text formats and in molecular flux diagrams.

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来源期刊
CiteScore
3.30
自引率
6.70%
发文量
74
审稿时长
3 months
期刊介绍: As the leading archival journal devoted exclusively to chemical kinetics, the International Journal of Chemical Kinetics publishes original research in gas phase, condensed phase, and polymer reaction kinetics, as well as biochemical and surface kinetics. The Journal seeks to be the primary archive for careful experimental measurements of reaction kinetics, in both simple and complex systems. The Journal also presents new developments in applied theoretical kinetics and publishes large kinetic models, and the algorithms and estimates used in these models. These include methods for handling the large reaction networks important in biochemistry, catalysis, and free radical chemistry. In addition, the Journal explores such topics as the quantitative relationships between molecular structure and chemical reactivity, organic/inorganic chemistry and reaction mechanisms, and the reactive chemistry at interfaces.
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