Taehee Chang, Saebom Choi, Hojong Jun, Jong-Yil Chai, Sang Hoon Song, Sehyeon Kim, Joon-Sup Yeom, Sung-il Cho, Kyung-Duk Min
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The models were trained with data from mosquito collection sites between 2009 and 2021 and tested with data from 2022. To evaluate the utility of nowcasting, we calculated the effective reproduction number (<i>R</i><sub>t</sub>), which can indicate malaria epidemic peaks. Generalized linear models (GLMs) were then used to assess the impact of vector mosquito abundance on <i>R</i><sub>t</sub>. The ensemble models demonstrated the best performance in nowcasting mosquito abundance, with a root mean square error (RMSE) of 0.90 and <i>R</i>-squared value (<i>R</i><sup>2</sup>) value of 0.85. The GBM model showed an RMSE of 0.91 and <i>R</i><sup>2</sup> of 0.84, while the XGB model had an RMSE of 0.92 and <i>R</i><sup>2</sup> of 0.85. Additionally, the <i>R</i><sup>2</sup> of the GLMs predicting <i>R</i><sub>t</sub> using mosquito abundance 2 weeks in advance was >0.72 for all provinces. The mosquito abundance coefficients were also significant. We constructed reliable models to nowcast mosquito abundance. These outcomes could potentially be incorporated into a malaria early warning system. Our study provides evidence to support the development of malaria management strategies in regions where malaria remains a public health challenge.</p>\n </div>","PeriodicalId":234,"journal":{"name":"Transboundary and Emerging Diseases","volume":"2025 1","pages":""},"PeriodicalIF":3.5000,"publicationDate":"2025-01-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1155/tbed/9959287","citationCount":"0","resultStr":"{\"title\":\"Nowcasting Vector Mosquito Abundance and Determining Its Association With Malaria Epidemics in South Korea\",\"authors\":\"Taehee Chang, Saebom Choi, Hojong Jun, Jong-Yil Chai, Sang Hoon Song, Sehyeon Kim, Joon-Sup Yeom, Sung-il Cho, Kyung-Duk Min\",\"doi\":\"10.1155/tbed/9959287\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div>\\n <p>Since a resurgence occurred in 1993, malaria has remained an endemic disease in the Republic of Korea (ROK). 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引用次数: 0
摘要
自从1993年疟疾卷土重来以来,它一直是大韩民国的一种地方病。一项主要挑战是由于报告延迟两周而无法获得目前的病媒蚊子数量数据,这限制了控制措施的及时实施。我们的目的是通过评估蚊子丰度对疟疾流行高峰的预测价值来预测蚊子丰度并评估其效用。我们使用机器学习模型来预报蚊子的丰度,采用梯度增强模型(GBMs)、极端梯度增强模型(XGB)和结合两者的集成模型。各种气象因素起着预报作用。这些模型使用2009年至2021年蚊子收集点的数据进行训练,并使用2022年的数据进行测试。为了评估临近预报的效用,我们计算了有效繁殖数(Rt),它可以指示疟疾流行高峰。采用广义线性模型(Generalized linear models, GLMs)评估媒介蚊类丰度对rt的影响。集合模型在近预报蚊类丰度方面表现最佳,均方根误差(RMSE)为0.90,r平方值(R2)为0.85。GBM模型的RMSE为0.91,R2为0.84,XGB模型的RMSE为0.92,R2为0.85。此外,所有省份使用蚊子数量提前2周预测Rt的GLMs的R2为>;0.72。蚊虫丰度系数也显著。我们建立了可靠的模型来预报蚊子的丰度。这些结果有可能被纳入疟疾早期预警系统。我们的研究为支持疟疾仍然是公共卫生挑战的地区制定疟疾管理战略提供了证据。
Nowcasting Vector Mosquito Abundance and Determining Its Association With Malaria Epidemics in South Korea
Since a resurgence occurred in 1993, malaria has remained an endemic disease in the Republic of Korea (ROK). A major challenge is the inaccessibility of current vector mosquito abundance data due to a 2-week reporting delay, which limits timely implementation of control measures. We aimed to nowcast mosquito abundance and assess its utility by evaluating the predictive value of mosquito abundance for malaria epidemic peaks. We used machine learning models to nowcast mosquito abundance, employing gradient boosting models (GBMs), extreme gradient boosting (XGB), and an ensemble model combining both. Various meteorological factors served as predictors. The models were trained with data from mosquito collection sites between 2009 and 2021 and tested with data from 2022. To evaluate the utility of nowcasting, we calculated the effective reproduction number (Rt), which can indicate malaria epidemic peaks. Generalized linear models (GLMs) were then used to assess the impact of vector mosquito abundance on Rt. The ensemble models demonstrated the best performance in nowcasting mosquito abundance, with a root mean square error (RMSE) of 0.90 and R-squared value (R2) value of 0.85. The GBM model showed an RMSE of 0.91 and R2 of 0.84, while the XGB model had an RMSE of 0.92 and R2 of 0.85. Additionally, the R2 of the GLMs predicting Rt using mosquito abundance 2 weeks in advance was >0.72 for all provinces. The mosquito abundance coefficients were also significant. We constructed reliable models to nowcast mosquito abundance. These outcomes could potentially be incorporated into a malaria early warning system. Our study provides evidence to support the development of malaria management strategies in regions where malaria remains a public health challenge.
期刊介绍:
Transboundary and Emerging Diseases brings together in one place the latest research on infectious diseases considered to hold the greatest economic threat to animals and humans worldwide. The journal provides a venue for global research on their diagnosis, prevention and management, and for papers on public health, pathogenesis, epidemiology, statistical modeling, diagnostics, biosecurity issues, genomics, vaccine development and rapid communication of new outbreaks. Papers should include timely research approaches using state-of-the-art technologies. The editors encourage papers adopting a science-based approach on socio-economic and environmental factors influencing the management of the bio-security threat posed by these diseases, including risk analysis and disease spread modeling. Preference will be given to communications focusing on novel science-based approaches to controlling transboundary and emerging diseases. The following topics are generally considered out-of-scope, but decisions are made on a case-by-case basis (for example, studies on cryptic wildlife populations, and those on potential species extinctions):
Pathogen discovery: a common pathogen newly recognised in a specific country, or a new pathogen or genetic sequence for which there is little context about — or insights regarding — its emergence or spread.
Prevalence estimation surveys and risk factor studies based on survey (rather than longitudinal) methodology, except when such studies are unique. Surveys of knowledge, attitudes and practices are within scope.
Diagnostic test development if not accompanied by robust sensitivity and specificity estimation from field studies.
Studies focused only on laboratory methods in which relevance to disease emergence and spread is not obvious or can not be inferred (“pure research” type studies).
Narrative literature reviews which do not generate new knowledge. Systematic and scoping reviews, and meta-analyses are within scope.