聚合物模拟的连续粒子耦合

IF 5.5 1区 化学 Q2 CHEMISTRY, PHYSICAL
Saeed Norouzi*, Rachel Furge, Hossein Eslami and Florian Müller-Plathe, 
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引用次数: 0

摘要

我们报道了一种并行混合多尺度模拟方法,其中粒子域与周围连续域耦合。粒子域采用粗粒度聚乳酸模型,连续体域采用有限元法处理。粗粒度模型由原子模型推导而来,采用迭代玻尔兹曼反演方案。粒子域和有限元域通过锚点在桥接域中重叠。在这种耦合中,信息在高分辨率和低分辨率域之间来回传递,有效地弥合了纳米尺度和宏观尺度之间的差距。采用该格式分别模拟了随机边界条件和半随机边界条件下的耦合粒子-连续域。在前一种情况下,锚点使粒子域的体积保持固定,而在后一种情况下,在周期方向的法向平面上没有锚点。研究了聚合物在随机和半随机边界条件下的应力-应变行为,并与纯有限元参考模拟结果进行了比较。在平面应力和平面应变条件下,研究了半随机边界条件下耦合系统的应力-应变关系,并与纯有限元参考模拟结果进行了比较。混合粒子-连续介质法较好地再现了纯有限元模拟结果。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

Continuum–Particle Coupling for Polymer Simulations

Continuum–Particle Coupling for Polymer Simulations

We report a concurrent hybrid multiscale simulation method, in which a particle domain is coupled with a surrounding continuum domain. The particle domain consists of a coarse-grained model of poly(lactic acid) and the continuum domain is treated using the finite element method. The coarse-grained model is derived from an atomistic model, using the iterative Boltzmann inversion scheme. The particle- and the finite element-domains overlap in a bridging domain through anchor points. In this coupling, the information passes back and forth between the high- and the low-resolution domains, effectively bridging the gap between the nano and macro-scales. This scheme is employed to simulate the coupled particle–continuum domains under both stochastic and semistochastic boundary conditions. While the anchor points keep the volume of the particle domain fixed in the former case, there is no anchor point in the planes normal to the periodic direction, in the latter case. The stress–strain behavior of polymer under both stochastic and semistochastic boundary conditions is investigated and the results are compared with those calculated from pure finite element reference simulations. Furthermore, the stress–strain relationship for the coupled system under the semistochastic boundary conditions is examined under plane stress and plane strain conditions, and the results are compared with those of pure finite element reference simulations. The hybrid particle–continuum method reproduces the pure finite element simulation results well.

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来源期刊
Journal of Chemical Theory and Computation
Journal of Chemical Theory and Computation 化学-物理:原子、分子和化学物理
CiteScore
9.90
自引率
16.40%
发文量
568
审稿时长
1 months
期刊介绍: The Journal of Chemical Theory and Computation invites new and original contributions with the understanding that, if accepted, they will not be published elsewhere. Papers reporting new theories, methodology, and/or important applications in quantum electronic structure, molecular dynamics, and statistical mechanics are appropriate for submission to this Journal. Specific topics include advances in or applications of ab initio quantum mechanics, density functional theory, design and properties of new materials, surface science, Monte Carlo simulations, solvation models, QM/MM calculations, biomolecular structure prediction, and molecular dynamics in the broadest sense including gas-phase dynamics, ab initio dynamics, biomolecular dynamics, and protein folding. The Journal does not consider papers that are straightforward applications of known methods including DFT and molecular dynamics. The Journal favors submissions that include advances in theory or methodology with applications to compelling problems.
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