PolyWAG: eDNA的自动过滤水采样。

IF 2.1 Q3 ENGINEERING, ELECTRICAL & ELECTRONIC
Riley Prince, Kai Roy, Nathan Jesudason, Marc Belinga, Jacob Field, Dylan Heiesy, Aaron Arvidson, Torrey Menne, John Selker, Chet Udell
{"title":"PolyWAG: eDNA的自动过滤水采样。","authors":"Riley Prince,&nbsp;Kai Roy,&nbsp;Nathan Jesudason,&nbsp;Marc Belinga,&nbsp;Jacob Field,&nbsp;Dylan Heiesy,&nbsp;Aaron Arvidson,&nbsp;Torrey Menne,&nbsp;John Selker,&nbsp;Chet Udell","doi":"10.1016/j.ohx.2024.e00617","DOIUrl":null,"url":null,"abstract":"<div><div>Environmental DNA (eDNA) is an ideal way of researching aquatic environments and determining what species are present in an area the biodiversity of an area, and if any invasive or endangered species are present. Traditional sampling of eDNA consists of manually filtering water, which is labor and cost-intensive for remote locations. Furthermore, commercialized solutions are either expensive or require a field operator to function. We have built a battery-powered eDNA sampler capable of autonomous multi-sampling for a greatly reduced price compared to existing technologies. Environmental DNA collection contains 3 main components: environmental DNA must be preserved, the filtered volume must be accurate, and there must be no cross-contamination between samples. The sampler operates in this way separating eDNA via filters, preserving DNA, and recording the filtered volume per sample. Our PolyWAG eDNA sampler system is a water sampling device that collects DNA samples via 47 mm filter and provides a non-invasive, safe and autonomous means of eDNA collection. The sampler can hold 24 filters and is designed to be easily replaced and reusable. A browser application is used for real-time monitoring, scheduling tasks, and data logging for time, pressure, flow, and filtered volume. Additionally, the sampler design is openly published, modular and is constantly being tested to help us optimize our software and hardware to give us the best results. The 13-step sampling sequence helps reduce cross contamination significantly. Our machine can be deployed for an extended period. It is completely autonomous and costs around $3800 for components or $6000 including labor.</div></div>","PeriodicalId":37503,"journal":{"name":"HardwareX","volume":"21 ","pages":"Article e00617"},"PeriodicalIF":2.1000,"publicationDate":"2024-12-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11783023/pdf/","citationCount":"0","resultStr":"{\"title\":\"PolyWAG: Autonomous filtered water sampling for eDNA\",\"authors\":\"Riley Prince,&nbsp;Kai Roy,&nbsp;Nathan Jesudason,&nbsp;Marc Belinga,&nbsp;Jacob Field,&nbsp;Dylan Heiesy,&nbsp;Aaron Arvidson,&nbsp;Torrey Menne,&nbsp;John Selker,&nbsp;Chet Udell\",\"doi\":\"10.1016/j.ohx.2024.e00617\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div><div>Environmental DNA (eDNA) is an ideal way of researching aquatic environments and determining what species are present in an area the biodiversity of an area, and if any invasive or endangered species are present. Traditional sampling of eDNA consists of manually filtering water, which is labor and cost-intensive for remote locations. Furthermore, commercialized solutions are either expensive or require a field operator to function. We have built a battery-powered eDNA sampler capable of autonomous multi-sampling for a greatly reduced price compared to existing technologies. Environmental DNA collection contains 3 main components: environmental DNA must be preserved, the filtered volume must be accurate, and there must be no cross-contamination between samples. The sampler operates in this way separating eDNA via filters, preserving DNA, and recording the filtered volume per sample. Our PolyWAG eDNA sampler system is a water sampling device that collects DNA samples via 47 mm filter and provides a non-invasive, safe and autonomous means of eDNA collection. The sampler can hold 24 filters and is designed to be easily replaced and reusable. A browser application is used for real-time monitoring, scheduling tasks, and data logging for time, pressure, flow, and filtered volume. Additionally, the sampler design is openly published, modular and is constantly being tested to help us optimize our software and hardware to give us the best results. The 13-step sampling sequence helps reduce cross contamination significantly. Our machine can be deployed for an extended period. It is completely autonomous and costs around $3800 for components or $6000 including labor.</div></div>\",\"PeriodicalId\":37503,\"journal\":{\"name\":\"HardwareX\",\"volume\":\"21 \",\"pages\":\"Article e00617\"},\"PeriodicalIF\":2.1000,\"publicationDate\":\"2024-12-30\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11783023/pdf/\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"HardwareX\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://www.sciencedirect.com/science/article/pii/S2468067224001111\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q3\",\"JCRName\":\"ENGINEERING, ELECTRICAL & ELECTRONIC\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"HardwareX","FirstCategoryId":"1085","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S2468067224001111","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q3","JCRName":"ENGINEERING, ELECTRICAL & ELECTRONIC","Score":null,"Total":0}
引用次数: 0

摘要

环境DNA (Environmental DNA, eDNA)是研究水生环境和确定一个地区存在什么物种、一个地区的生物多样性以及是否存在任何入侵或濒危物种的理想方法。传统的eDNA采样包括手动过滤水,这对于偏远地区来说是劳动力和成本密集型的。此外,商业化的解决方案要么价格昂贵,要么需要现场操作人员来操作。我们已经建立了一个电池供电的eDNA采样器,能够自主多次采样,与现有技术相比,价格大大降低。环境DNA采集包含3个主要组成部分:环境DNA必须保存,过滤体积必须准确,样品之间必须没有交叉污染。采样器以这种方式工作,通过过滤器分离eDNA,保存DNA,并记录每个样品的过滤体积。我们的PolyWAG eDNA采样系统是一种水采样设备,通过47毫米过滤器收集DNA样本,提供非侵入性,安全和自主的eDNA收集手段。采样器可以容纳24个过滤器,设计方便更换和重复使用。浏览器应用程序用于实时监控、调度任务和记录时间、压力、流量和过滤体积的数据。此外,采样器设计是公开发布的,模块化的,并不断进行测试,以帮助我们优化软件和硬件,为我们提供最佳结果。13步取样顺序有助于显著减少交叉污染。我们的机器可以长期使用。它是完全自主的,零部件成本约为3800美元,包括人工在内的成本约为6000美元。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

PolyWAG: Autonomous filtered water sampling for eDNA

PolyWAG: Autonomous filtered water sampling for eDNA
Environmental DNA (eDNA) is an ideal way of researching aquatic environments and determining what species are present in an area the biodiversity of an area, and if any invasive or endangered species are present. Traditional sampling of eDNA consists of manually filtering water, which is labor and cost-intensive for remote locations. Furthermore, commercialized solutions are either expensive or require a field operator to function. We have built a battery-powered eDNA sampler capable of autonomous multi-sampling for a greatly reduced price compared to existing technologies. Environmental DNA collection contains 3 main components: environmental DNA must be preserved, the filtered volume must be accurate, and there must be no cross-contamination between samples. The sampler operates in this way separating eDNA via filters, preserving DNA, and recording the filtered volume per sample. Our PolyWAG eDNA sampler system is a water sampling device that collects DNA samples via 47 mm filter and provides a non-invasive, safe and autonomous means of eDNA collection. The sampler can hold 24 filters and is designed to be easily replaced and reusable. A browser application is used for real-time monitoring, scheduling tasks, and data logging for time, pressure, flow, and filtered volume. Additionally, the sampler design is openly published, modular and is constantly being tested to help us optimize our software and hardware to give us the best results. The 13-step sampling sequence helps reduce cross contamination significantly. Our machine can be deployed for an extended period. It is completely autonomous and costs around $3800 for components or $6000 including labor.
求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
HardwareX
HardwareX Engineering-Industrial and Manufacturing Engineering
CiteScore
4.10
自引率
18.20%
发文量
124
审稿时长
24 weeks
期刊介绍: HardwareX is an open access journal established to promote free and open source designing, building and customizing of scientific infrastructure (hardware). HardwareX aims to recognize researchers for the time and effort in developing scientific infrastructure while providing end-users with sufficient information to replicate and validate the advances presented. HardwareX is open to input from all scientific, technological and medical disciplines. Scientific infrastructure will be interpreted in the broadest sense. Including hardware modifications to existing infrastructure, sensors and tools that perform measurements and other functions outside of the traditional lab setting (such as wearables, air/water quality sensors, and low cost alternatives to existing tools), and the creation of wholly new tools for either standard or novel laboratory tasks. Authors are encouraged to submit hardware developments that address all aspects of science, not only the final measurement, for example, enhancements in sample preparation and handling, user safety, and quality control. The use of distributed digital manufacturing strategies (e.g. 3-D printing) is encouraged. All designs must be submitted under an open hardware license.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:604180095
Book学术官方微信