病理编码:重新思考基于补丁的学习在计算病理学多类分类中的缺陷。

IF 2 3区 工程技术 Q2 ANATOMY & MORPHOLOGY
Ferdaous Idlahcen, Pierjos Francis Colere Mboukou, Ali Idri, Hicham El Attar
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引用次数: 0

摘要

临床环境中基于病理的决策支持系统面临着预先准备数据、大规模手工注释和较差的领域泛化的障碍。我们报告了一个统一的混合框架,只有原始的,幻灯片级别的标签图像。该方法,我们称之为病理编码,包括核心特征提取器,特征组合/约简和监督分类器。通过5次交叉验证,对2452张SurePath宫颈液体全片图像进行了训练,这些图像来自Mendeley知识库。测试结果表明,正确率为98.37%,精密度为98.37%,召回率为98.41%,F1为98.37%。广泛的实验验证了所提出的方案和足够的通用性,以适应卵巢上皮性肿瘤组织类型。我们的方法通过减少基于补丁/像素的注释和良好的组织质量依赖,为病理人工智能的更快发展铺平了道路。它的适用性涵盖了具有不同组织内容的各种分类任务,并具有在现实世界中实现的潜力。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
PathoCoder: Rethinking the Flaws of Patch-Based Learning for Multi-Class Classification in Computational Pathology

Pathology-based decision support systems in clinical settings have faced impediments from data preparation beforehand, large-scale manual annotations, and poor domain generalization. We report a unified hybrid framework with only raw, slide-level label images. The method, which we termed PathoCoder, comprises core feature extractors, a feature combiner/reduction, and a supervised classifier. It is trained (through 5-fold cross-validation) on 2452 SurePath cervical liquid-based whole-slide captures, provided from Mendeley repository. Tests resulted in 98.37%, 98.37%, 98.41%, and 98.37% in accuracy, precision, recall, and F1, respectively. Extensive experiments validate the proposed scheme and versatility enough to accommodate epithelial ovarian tumor histotypes. Our method paves the way for more accelerated advancements in pathology AI by reducing patch/pixel-based annotation and good tissue quality dependency. Its applicability spans diverse classification tasks with varying tissue content and holds potential for real-world implementation.

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来源期刊
Microscopy Research and Technique
Microscopy Research and Technique 医学-解剖学与形态学
CiteScore
5.30
自引率
20.00%
发文量
233
审稿时长
4.7 months
期刊介绍: Microscopy Research and Technique (MRT) publishes articles on all aspects of advanced microscopy original architecture and methodologies with applications in the biological, clinical, chemical, and materials sciences. Original basic and applied research as well as technical papers dealing with the various subsets of microscopy are encouraged. MRT is the right form for those developing new microscopy methods or using the microscope to answer key questions in basic and applied research.
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