Meryem Abbad Andaloussi, Raphael Maser, Frank Hertel, François Lamoline, Andreas Dominik Husch
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We analyzed the characteristics of these datasets, such as the origin, size, format, annotation, and accessibility. Additionally, we examined the distribution of tumor types, grades, and stages among the datasets. The implications of the evolution of the World Health Organization (WHO) classification on tumors of the brain are discussed, in particular the 2021 update that significantly changed the definition of glioblastoma.</p><p><strong>Conclusions: </strong>Potential research questions that could be explored using these datasets were highlighted, such as tumor evolution through malignant transformation, MRI normalization, and tumor segmentation. Interestingly, only 2 datasets among the 28 studied reflect the current WHO classification. 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引用次数: 0
摘要
背景:公开可用的数据对于医学图像分析的进展至关重要,特别是对于制作机器学习模型。胶质瘤是最常见的原发性脑肿瘤,磁共振成像(MRI)是其诊断和治疗中广泛使用的一种方式。然而,胶质瘤MRI的公共数据集的可用性和质量尚不清楚。方法:在本综述中,我们使用谷歌Dataset Search、The Cancer Imaging Archive和Synapse搜索神经胶质瘤MRI的公共数据集。结果:共检索到2005年至2024年5月发表的28个数据集,包含5515例患者的62 019张图像。我们分析了这些数据集的特征,如来源、大小、格式、注释和可访问性。此外,我们检查了数据集中肿瘤类型、分级和分期的分布。本文讨论了世界卫生组织(世卫组织)分类演变对脑肿瘤的影响,特别是2021年的更新,它显著改变了胶质母细胞瘤的定义。结论:强调了利用这些数据集可以探索的潜在研究问题,如肿瘤通过恶性转化的演变,MRI归一化和肿瘤分割。有趣的是,在研究的28个数据集中,只有2个数据集反映了世卫组织目前的分类。这篇综述提供了一个关于胶质瘤MRI公开可用数据集的全面概述,为医学图像分析研究人员在有效数据集选择方面的决策提供了帮助。
Exploring adult glioma through MRI: A review of publicly available datasets to guide efficient image analysis.
Background: Publicly available data are essential for the progress of medical image analysis, in particular for crafting machine learning models. Glioma is the most common group of primary brain tumors, and magnetic resonance imaging (MRI) is a widely used modality in their diagnosis and treatment. However, the availability and quality of public datasets for glioma MRI are not well known.
Methods: In this review, we searched for public datasets of glioma MRI using Google Dataset Search, The Cancer Imaging Archive, and Synapse.
Results: A total of 28 datasets published between 2005 and May 2024 were found, containing 62 019 images from 5515 patients. We analyzed the characteristics of these datasets, such as the origin, size, format, annotation, and accessibility. Additionally, we examined the distribution of tumor types, grades, and stages among the datasets. The implications of the evolution of the World Health Organization (WHO) classification on tumors of the brain are discussed, in particular the 2021 update that significantly changed the definition of glioblastoma.
Conclusions: Potential research questions that could be explored using these datasets were highlighted, such as tumor evolution through malignant transformation, MRI normalization, and tumor segmentation. Interestingly, only 2 datasets among the 28 studied reflect the current WHO classification. This review provides a comprehensive overview of the publicly available datasets for glioma MRI currently at our disposal, providing aid to medical image analysis researchers in their decision-making on efficient dataset choice.