基于基因表达谱的银屑病自噬相关关键基因筛选

IF 1.4 4区 医学 Q3 ALLERGY
Postepy Dermatologii I Alergologii Pub Date : 2024-12-01 Epub Date: 2024-12-18 DOI:10.5114/ada.2024.145618
Suo Mo, Chunyan Cao, Xiaoyue Dai, Zhiwen Ding, Yajuan Zuo, Chuchu Song, Xianfeng Cheng
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引用次数: 0

摘要

导读:自噬对于牛皮癣的发展是必要的。目的:通过生物信息学研究发现银屑病中可能存在的自噬相关基因,为银屑病的临床治疗和管理提供更好的标准。材料和方法:利用GEO数据集推导数据库GSE78097的mRNA表达谱。利用R软件寻找可能在牛皮癣中表达的自噬相关基因。然后,对差异表达的自噬相关基因进行蛋白-蛋白相互作用(PPI)相关性研究,并使用GO和KEGG富集分析来研究任何潜在的相关信号通路。结果:我们在27例牛皮癣患者和6例健康皮肤组织样本中共鉴定出156个自噬相关基因。PPI网络图显示了这些自噬相关基因之间的相互作用。KEGG和GO富集分析表明,自噬、蛋白质加工、细胞凋亡和线粒体过程可能在银屑病的发展和发生中起着至关重要的作用。结论:利用生物信息学方法识别差异表达的自噬相关基因,进一步增强了我们对银屑病的认识,为银屑病发病机制和治疗靶点的研究提供了新的思路。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Screening of key genes related to autophagy in psoriasis based on gene expression profiling.

Introduction: Autophagy is necessary for the progression of psoriasis.

Aim: This study aimed to recognize possible autophagy-related genes in psoriasis via bioinformatics study to present a better standard for the clinical treatment and management of psoriasis.

Material and methods: The GEO dataset was utilized to derive the mRNA expression profile of the database GSE78097. R software was utilized to find autophagy-associated genes that may be expressed in psoriasis. Then, a protein-protein interaction (PPI) correlation study of the differentially expressed autophagy-associated genes was carried out, and GO and KEGG enrichment analysis was used to investigate any potential signalling pathways linked.

Results: We identified a total of 156 autophagy-related genes in 27 psoriasis and 6 healthy skin tissue samples. The PPI network diagram findings demonstrate interactions among these autophagy-associated genes. Autophagy, protein processing, apoptosis, and mitochondria processes may be crucial in the development and occurrence of psoriasis suggested by KEGG and GO enrichment analysis.

Conclusions: Utilizing bioinformatics methods to recognize differentially expressed autophagy-related genes has further enhanced our understanding of psoriasis and provided new thinking for the study of the pathogenesis and therapeutic targets of psoriasis.

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来源期刊
CiteScore
2.60
自引率
7.10%
发文量
107
审稿时长
6-12 weeks
期刊介绍: Advances in Dermatology and Allergology/Postępy Dermatologii i Alergologii is a bimonthly aimed at allergologists and dermatologists.
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