白斑蜂(Meteorus pulchricornis Wesmael)染色体水平基因组组装(膜翅目:小蜂科)。

IF 6.9 2区 综合性期刊 Q1 MULTIDISCIPLINARY SCIENCES
Shiji Tian, Ruizhong Yuan, Xingzhou Ma, XiaoHan Shu, Yu Fang, Zhaohe Lu, Qiuyu Qu, Yu Jin, Jiabao Gong, Yanlin Peng, Ziqi Wang, Xiqian Ye, Xuexin Chen, Pu Tang
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引用次数: 0

摘要

扁茧蜂(Meteorus pulchricornis Wesmael)是鳞翅目昆虫中重要的寄生蜂。到目前为止,只发表了三个关于流星属的支架水平基因组。在这项研究中,我们提出了一个高质量的,染色体水平的基因组组装,其特点是高准确性和连续性。该组装是使用Oxford Nanopore Technologies长读、MGI-SEQ短读和Hi-C测序方法实现的。最终组装的基因组大小为158.5 Mb,其中153.8 Mb(97.03%)分配给10条假染色体。支架N50长度达到17.51 Mb,完成Benchmarking Universal Single-Copy Orthologs (BUSCO)评分为99.3%。基因组包含28.29 Mb的重复元件,占总基因组大小的18.39%。我们鉴定出12342个蛋白质编码基因,其中12308个基因被功能注释。结果表明,白斑棘猴基因家族扩增563个,收缩1739个,快速进化58个。我们报道的高质量基因组组装有利于进一步研究寄生蜂,并为天敌研究提供基础数据资源。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

A chromosome-level genome assembly of Meteorus pulchricornis Wesmael (Hymenoptera: Braconidae).

A chromosome-level genome assembly of Meteorus pulchricornis Wesmael (Hymenoptera: Braconidae).

A chromosome-level genome assembly of Meteorus pulchricornis Wesmael (Hymenoptera: Braconidae).

A chromosome-level genome assembly of Meteorus pulchricornis Wesmael (Hymenoptera: Braconidae).

Meteorus pulchricornis Wesmael (Hymenoptera: Braconidae) is an important parasitoid of lepidopteran insects. So far, only three scaffold-level genomes have been published for the genus Meteorus. In this study, we present a high-quality, chromosome-level genome assembly of M. pulchricornis, characterized by high accuracy and contiguity. This assembly was achieved using Oxford Nanopore Technologies long-read, MGI-SEQ short-read, and Hi-C sequencing methods. The final assembly was 158.5 Mb in genome size, with 153.8 Mb (97.03%) assigned to ten pseudochromosomes. The scaffold N50 length reached 17.51 Mb, and the complete Benchmarking Universal Single-Copy Orthologs (BUSCO) score was 99.3%. The genome contains 28.29 Mb of repetitive elements, accounting for 18.39% of the total genome size. We identified 12,342 protein-coding genes, of which 12,308 genes were annotated functionally. Our investigation into gene family evolution in M. pulchricornis showed that 563 gene families expanded, 1,739 contracted, and 58 underwent rapid evolution. The high-quality genome assembly we report here is advantageous for further research on parasitoid wasps and provides a foundational data resource for natural enemy studies.

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来源期刊
Scientific Data
Scientific Data Social Sciences-Education
CiteScore
11.20
自引率
4.10%
发文量
689
审稿时长
16 weeks
期刊介绍: Scientific Data is an open-access journal focused on data, publishing descriptions of research datasets and articles on data sharing across natural sciences, medicine, engineering, and social sciences. Its goal is to enhance the sharing and reuse of scientific data, encourage broader data sharing, and acknowledge those who share their data. The journal primarily publishes Data Descriptors, which offer detailed descriptions of research datasets, including data collection methods and technical analyses validating data quality. These descriptors aim to facilitate data reuse rather than testing hypotheses or presenting new interpretations, methods, or in-depth analyses.
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