掌槭NAC转录因子基因家族的全基因组分析为叶片衰老的自然过程提供了有价值的见解。

IF 2.3 3区 生物学 Q2 MULTIDISCIPLINARY SCIENCES
PeerJ Pub Date : 2025-01-13 eCollection Date: 2025-01-01 DOI:10.7717/peerj.18817
Xin Meng, Chun Feng, Zhu Chen, Faheem Afzal Shah, Yue Zhao, Yuzhi Fei, Hongfei Zhao, Jie Ren
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引用次数: 0

摘要

棕榈槭是一种落叶灌木或小树。它是一种受欢迎的观赏植物,因为它美丽的叶子在秋天变色。本研究揭示了掌叶芭蕉基因组中存在的116个ApNAC基因。这些基因不均匀地分布在棕掌草的13条染色体上。对拟南芥NAC家族成员的系统发育树分析表明,ApNAC蛋白可划分为16个亚群。ApNAC蛋白与其他物种的NAC基因的比较表明它们可能参与了进化过程。研究表明串联和片段复制可能是ApNAC基因家族扩增的关键驱动因素。转录组学分析和qRT-PCR结果显示,大多数ApNAC基因在秋叶衰老过程中表达水平明显高于夏叶。共表达网络分析显示,10个ApNAC基因的表达谱与其他200个基因的表达谱显著相关,其中大部分与植物衰老过程有关。综上所述,本研究有助于阐明ApNAC基因家族的理论基础,为进一步研究NAC基因在木本观赏植物叶片衰老调控中的作用提供了有价值的基础。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Genome-wide analyses of the NAC transcription factor gene family in Acer palmatum provide valuable insights into the natural process of leaf senescence.

Acer palmatum is a deciduous shrub or small tree. It is a popular ornamental plant because of its beautiful leaves, which change colour in autumn. This study revealed 116 ApNAC genes within the genome of A. palmatum. These genes are unevenly distributed on the 13 chromosomes of A. palmatum. An analysis of the phylogenetic tree of Arabidopsis thaliana NAC family members revealed that ApNAC proteins could be divided into 16 subgroups. A comparison of ApNAC proteins with NAC genes from other species suggested their potential involvement in evolutionary processes. Studies suggest that tandem and segmental duplications may be key drivers of the expansion of the ApNAC gene family. Analysis of the transcriptomic data and qRT‒PCR results revealed significant upregulation of most ApNAC genes during autumn leaf senescence compared with their expression levels in summer leaves. Coexpression network analysis revealed that the expression profiles of 10 ApNAC genes were significantly correlated with those of 200 other genes, most of which are involved in plant senescence processes. In conclusion, this study contributes to elucidating the theoretical foundation of the ApNAC gene family and provides a valuable basis for future investigations into the role of NAC genes in regulating leaf senescence in woody ornamental plants.

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来源期刊
PeerJ
PeerJ MULTIDISCIPLINARY SCIENCES-
CiteScore
4.70
自引率
3.70%
发文量
1665
审稿时长
10 weeks
期刊介绍: PeerJ is an open access peer-reviewed scientific journal covering research in the biological and medical sciences. At PeerJ, authors take out a lifetime publication plan (for as little as $99) which allows them to publish articles in the journal for free, forever. PeerJ has 5 Nobel Prize Winners on the Board; they have won several industry and media awards; and they are widely recognized as being one of the most interesting recent developments in academic publishing.
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