Salinisphaera halophila Zhang et al. 2012作为Salinisphaera orenii Park et al. 2012后异型同义词的再分类。

IF 2.3 3区 生物学 Q3 MICROBIOLOGY
Syed Raziuddin Quadri, Manda Sathish, Ngoc Tung Quach, Wen-Jun Li, Manik Prabhu Narsing Rao
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引用次数: 0

摘要

本研究对嗜盐盐蚤(Salinisphaera halophila, NZ_AYKF00000000)和orenii盐蚤(Salinisphaera orenii, NZ_AYKH00000000)的分类地位进行了重新评价。此外,还确定了它们的代谢潜力和缓解应激条件的机制。比较16S rRNA基因序列,分析系统发育树、系统基因组树、平均核苷酸同一性(ANI)和数字DNA-DNA杂交(dDDH)值。嗜盐盐phaera YIM 95161T与orenii Salinisphaera MK-B5T的16S rRNA基因序列相似性为100%。在系统发育树和系统基因组树中,嗜盐盐碱(Salinisphaera halophila YIM 95161T)和奥氏盐碱(Salinisphaera orenii mk - b5t)聚集在一起。这两个物种都编码糖酵解、柠檬酸循环、戊糖磷酸途径、enterner - doudoroff途径、硝酸盐同化和同化硫酸盐还原的基因。他们采用盐进盐出的策略来减轻盐的压力。嗜盐盐碱(Salinisphaera halophila YIM 95161)和奥氏盐碱(Salinisphaera orenii mk - b5t)的ANI和dDDH值分别为96.6和72.1%,高于物种划分的临界值(ANI为95-96%,dDDH为70%)。基于以上结果,我们建议将Salinisphaera halophila Zhang et al. 2012重新分类为Salinisphaera orenii Park et al. 2012的后异型同义种。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Reclassification of Salinisphaera halophila Zhang et al. 2012 as a Later Heterotypic Synonym of Salinisphaera orenii Park et al. 2012.

In the present study, the taxonomic position of Salinisphaera halophila (NZ_AYKF00000000) and Salinisphaera orenii (NZ_AYKH00000000) was re-evaluated. In addition, their metabolic potentials and mechanisms for mitigating stress conditions were determined. Comparisons of 16S rRNA gene sequences, analysis of the phylogenetic tree, phylogenomic tree, average nucleotide identity (ANI), and digital DNA-DNA hybridization (dDDH) values were conducted. The 16S rRNA gene sequence similarity between Salinisphaera halophila YIM 95161T and Salinisphaera orenii MK-B5T was 100%. In phylogenetic and phylogenomic trees, Salinisphaera halophila YIM 95161T and Salinisphaera orenii MK-B5Tclustered together. Both species encode genes for glycolysis, citrate cycle, pentose phosphate pathway, Entner-Doudoroff pathway, nitrate assimilation, and assimilatory sulfate reduction. They employ salt-in and salt-out strategies to mitigate salt stress. The ANI and dDDH values between Salinisphaera halophila YIM 95161Tand Salinisphaera orenii MK-B5Twere 96.6 and 72.1%, respectively, above the cut-off (95-96% for ANI and 70% for dDDH) for species delineation. Based on the above results, we propose to reclassify Salinisphaera halophila Zhang et al. 2012 as a later heterotypic synonym of Salinisphaera orenii Park et al. 2012.

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来源期刊
Current Microbiology
Current Microbiology 生物-微生物学
CiteScore
4.80
自引率
3.80%
发文量
380
审稿时长
2.5 months
期刊介绍: Current Microbiology is a well-established journal that publishes articles in all aspects of microbial cells and the interactions between the microorganisms, their hosts and the environment. Current Microbiology publishes original research articles, short communications, reviews and letters to the editor, spanning the following areas: physiology, biochemistry, genetics, genomics, biotechnology, ecology, evolution, morphology, taxonomy, diagnostic methods, medical and clinical microbiology and immunology as applied to microorganisms.
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