15n检测TROSY用于1H-15N异核相关研究内在无序蛋白:提高光谱质量的策略。

IF 1.3 3区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY
Maria Anna Rodella, Robert Schneider, Rainer Kümmerle, Isabella C Felli, Roberta Pierattelli
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引用次数: 0

摘要

内在无序的蛋白质和蛋白质区域是许多生物过程的中心,但难以在原子分辨率上表征。核磁共振特别适合于提供内在无序蛋白质的结构和动态信息,但现有的核磁共振方法需要不断改进,以提供更高的灵敏度和分辨率,特别是利用高磁场的潜力来研究大型蛋白质。在本文中,我们描述了如何优化15n检测的二维核磁共振实验以获得更好的性能。我们发现,在N-TROSY型实验中,使用选择性脂肪族1H解耦可以显著提高对典型内在无序蛋白α-突触核蛋白的灵敏度和分辨率,以及对大型多结构域蛋白CBP-ID4的异质内在无序区域的灵敏度和分辨率。我们还研究了在N-TROSY实验中加入纵向弛豫增强的性能,无论是否有脂肪族1H解耦,并根据两种体系的现有信息讨论了这些发现。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
15N-detected TROSY for 1H-15N heteronuclear correlation to study intrinsically disordered proteins: strategies to increase spectral quality.

Intrinsically disordered proteins and protein regions are central to many biological processes but difficult to characterize at atomic resolution. Nuclear magnetic resonance is particularly well-suited for providing structural and dynamical information on intrinsically disordered proteins, but existing NMR methodologies need to be constantly refined to provide greater sensitivity and resolution, particularly to capitalise on the potential of high magnetic fields to investigate large proteins. In this paper, we describe how 15N-detected 2D NMR experiments can be optimised for better performance. We show that using selective aliphatic 1H decoupling in N-TROSY type experiments results in significant increases in sensitivity and resolution for a prototypical intrinsically disordered protein, α-synuclein, as well as for a heterogeneous intrinsically disordered region of a large multidomain protein, CBP-ID4. We also investigated the performance of incorporating longitudinal relaxation enhancement in N-TROSY experiments, both with and without aliphatic 1H decoupling, and discussed the findings in light of the available information for the two systems.

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来源期刊
Journal of Biomolecular NMR
Journal of Biomolecular NMR 生物-光谱学
CiteScore
6.00
自引率
3.70%
发文量
19
审稿时长
6-12 weeks
期刊介绍: The Journal of Biomolecular NMR provides a forum for publishing research on technical developments and innovative applications of nuclear magnetic resonance spectroscopy for the study of structure and dynamic properties of biopolymers in solution, liquid crystals, solids and mixed environments, e.g., attached to membranes. This may include: Three-dimensional structure determination of biological macromolecules (polypeptides/proteins, DNA, RNA, oligosaccharides) by NMR. New NMR techniques for studies of biological macromolecules. Novel approaches to computer-aided automated analysis of multidimensional NMR spectra. Computational methods for the structural interpretation of NMR data, including structure refinement. Comparisons of structures determined by NMR with those obtained by other methods, e.g. by diffraction techniques with protein single crystals. New techniques of sample preparation for NMR experiments (biosynthetic and chemical methods for isotope labeling, preparation of nutrients for biosynthetic isotope labeling, etc.). An NMR characterization of the products must be included.
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