Xingxuan Chen, Yu Shang, Danting Shen, Si Shi, Zhe Wen, Lijuan Li, Hong Chen
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Bidirectional Mendelian randomization analysis, Steiger filtering, colocalization, and phenotype scanning were employed for reverse causal inference detection, further substantiating the Mendelian randomization results. A protein-protein interaction network was also constructed to reveal potential associations between proteins and asthma medications.</p><p><strong>Results: </strong>Under Bonferroni significance conditions, Mendelian randomization analysis revealed causal relationships between seven proteins and asthma. In plasma, we observed that an increase of one standard deviation in IL1R1[1.30 (95% CI 1.20-1.42)], IL7R[1.07 (95% CI 1.04-1.11)], ECM1[1.03 (95% CI 1.02-1.05)], and CD200R1[1.18 (95% CI 1.09-1.27)] were associated with an increased risk of asthma, while an increase in ADAM19 [0.87 (95% CI 0.82-0.92)] was found to be protective. In the brain, each 10-fold increase in IL-6 sRa [1.29 (95% CI 1.15-1.45)] was associated with an increased risk of asthma, while an increase in Layilin [0.61 (95% CI 0.51-0.73)] was found to be protective. None of the seven proteins exhibited a reverse causal relationship. Colocalization analysis indicated that ECM1 (coloc.abf-PPH4 = 0.953), IL-6 sRa (coloc.abf-PPH4 = 0.966), and layilin (coloc.abf-PPH4 = 0.975) shared the same genetic variation as in asthma.</p><p><strong>Conclusion: </strong>A causal relationship exists between genetically determined protein levels of IL1R1, IL7R, ECM1, CD200R1, ADAM19, IL-6 sRa, and Layilin (LAYN) and asthma. Moreover, the identified proteins may serve as attractive drug targets for asthma, especially ECM1 and Layilin (LAYN). 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A protein-protein interaction network was also constructed to reveal potential associations between proteins and asthma medications.</p><p><strong>Results: </strong>Under Bonferroni significance conditions, Mendelian randomization analysis revealed causal relationships between seven proteins and asthma. In plasma, we observed that an increase of one standard deviation in IL1R1[1.30 (95% CI 1.20-1.42)], IL7R[1.07 (95% CI 1.04-1.11)], ECM1[1.03 (95% CI 1.02-1.05)], and CD200R1[1.18 (95% CI 1.09-1.27)] were associated with an increased risk of asthma, while an increase in ADAM19 [0.87 (95% CI 0.82-0.92)] was found to be protective. In the brain, each 10-fold increase in IL-6 sRa [1.29 (95% CI 1.15-1.45)] was associated with an increased risk of asthma, while an increase in Layilin [0.61 (95% CI 0.51-0.73)] was found to be protective. None of the seven proteins exhibited a reverse causal relationship. 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引用次数: 0
摘要
背景:新的分子靶向药物的出现标志着哮喘治疗,特别是重症哮喘治疗的突破。然而,中重度哮喘治疗的选择仍然有限,这凸显了对新型治疗药物靶点的迫切需求。在这项研究中,我们旨在利用孟德尔随机化方法和大规模全基因组关联数据(GWAS)来确定哮喘的新治疗靶点。方法:我们利用来自UK Biobank(包括56,167名患者和352,255名对照受试者)和FinnGen队列(包括23,834名患者和228,085名对照受试者)的GWAS数据。从最近发表的GWAS中获得了用于734种血浆蛋白和154种脑脊液蛋白的遗传仪器。采用双向孟德尔随机化分析、Steiger滤波、共定位和表型扫描进行反向因果推理检测,进一步证实孟德尔随机化结果。蛋白质-蛋白质相互作用网络也被构建以揭示蛋白质与哮喘药物之间的潜在关联。结果:在Bonferroni显著性条件下,孟德尔随机化分析揭示了7种蛋白与哮喘之间的因果关系。在血浆中,我们观察到IL1R1[1.30 (95% CI 1.20-1.42)]、IL7R[1.07 (95% CI 1.04-1.11)]、ECM1[1.03 (95% CI 1.02-1.05)]和CD200R1[1.18 (95% CI 1.09-1.27)]增加一个标准差与哮喘风险增加相关,而ADAM19 [0.87 (95% CI 0.82-0.92)]的增加被发现具有保护作用。在大脑中,IL-6 sRa每增加10倍[1.29 (95% CI 1.15-1.45)]与哮喘风险增加相关,而Layilin的增加[0.61 (95% CI 0.51-0.73)]被发现具有保护作用。这7种蛋白质都没有表现出反向的因果关系。共定位分析表明,ECM1 (colc .abf- pph4 = 0.953)、IL-6 sRa (colc .abf- pph4 = 0.966)和layilin (colc .abf- pph4 = 0.975)与哮喘具有相同的遗传变异。结论:基因决定的IL1R1、IL7R、ECM1、CD200R1、ADAM19、IL-6 sRa、layin (LAYN)蛋白水平与哮喘存在因果关系。此外,鉴定的蛋白可能作为哮喘的有吸引力的药物靶点,特别是ECM1和Layilin (LAYN)。然而,需要进一步的研究来全面了解这些蛋白在哮喘发生和发展中的作用。
Potential drug targets for asthma identified through mendelian randomization analysis.
Background: The emergence of new molecular targeted drugs marks a breakthrough in asthma treatment, particularly for severe cases. Yet, options for moderate-to-severe asthma treatment remain limited, highlighting the urgent need for novel therapeutic drug targets. In this study, we aimed to identify new treatment targets for asthma using the Mendelian randomization method and large-scale genome-wide association data (GWAS).
Methods: We utilized GWAS data from the UK Biobank (comprising 56,167 patients and 352,255 control subjects) and the FinnGen cohort (including 23,834 patients and 228,085 control subjects). Genetic instruments for 734 plasma proteins and 154 cerebrospinal fluid proteins were derived from recently published GWAS. Bidirectional Mendelian randomization analysis, Steiger filtering, colocalization, and phenotype scanning were employed for reverse causal inference detection, further substantiating the Mendelian randomization results. A protein-protein interaction network was also constructed to reveal potential associations between proteins and asthma medications.
Results: Under Bonferroni significance conditions, Mendelian randomization analysis revealed causal relationships between seven proteins and asthma. In plasma, we observed that an increase of one standard deviation in IL1R1[1.30 (95% CI 1.20-1.42)], IL7R[1.07 (95% CI 1.04-1.11)], ECM1[1.03 (95% CI 1.02-1.05)], and CD200R1[1.18 (95% CI 1.09-1.27)] were associated with an increased risk of asthma, while an increase in ADAM19 [0.87 (95% CI 0.82-0.92)] was found to be protective. In the brain, each 10-fold increase in IL-6 sRa [1.29 (95% CI 1.15-1.45)] was associated with an increased risk of asthma, while an increase in Layilin [0.61 (95% CI 0.51-0.73)] was found to be protective. None of the seven proteins exhibited a reverse causal relationship. Colocalization analysis indicated that ECM1 (coloc.abf-PPH4 = 0.953), IL-6 sRa (coloc.abf-PPH4 = 0.966), and layilin (coloc.abf-PPH4 = 0.975) shared the same genetic variation as in asthma.
Conclusion: A causal relationship exists between genetically determined protein levels of IL1R1, IL7R, ECM1, CD200R1, ADAM19, IL-6 sRa, and Layilin (LAYN) and asthma. Moreover, the identified proteins may serve as attractive drug targets for asthma, especially ECM1 and Layilin (LAYN). However, further research is required to comprehensively understand the roles of these proteins in the occurrence and progression of asthma.
期刊介绍:
Respiratory Research publishes high-quality clinical and basic research, review and commentary articles on all aspects of respiratory medicine and related diseases.
As the leading fully open access journal in the field, Respiratory Research provides an essential resource for pulmonologists, allergists, immunologists and other physicians, researchers, healthcare workers and medical students with worldwide dissemination of articles resulting in high visibility and generating international discussion.
Topics of specific interest include asthma, chronic obstructive pulmonary disease, cystic fibrosis, genetics, infectious diseases, interstitial lung diseases, lung development, lung tumors, occupational and environmental factors, pulmonary circulation, pulmonary pharmacology and therapeutics, respiratory immunology, respiratory physiology, and sleep-related respiratory problems.