内在无序蛋白质构象波动的无标度时空相关性。

IF 14.1 1区 材料科学 Q1 CHEMISTRY, MULTIDISCIPLINARY
Haoyu Song, Jian Cui, Guorong Hu, Long Xiong, Yanee Wutthinitikornkit, Hai Lei, Jingyuan Li
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引用次数: 0

摘要

内在无序蛋白(IDPs)自组装成凝聚相和无膜细胞器(MLOs)的形成可以被认为是集体行为的现象。IDPs的构象动力学对它们的相互作用和凝聚相的形成至关重要。从物理角度看,集体行为和相的出现与长程相关性有关。本文采用µs尺度原子分子动力学(MD)模拟和单分子Förster共振能量转移(smFRET)实验,分析了IDPs的构象动力学及其相关性。证明了IDP构象波动中存在典型的无标度时空相关性。它们的构象演化表现出“1/f噪声”功率谱,并伴随着幂律大小分布的残留域的出现。此外,残留物的运动表现出无标度的行为相关性。这些无标度相关性类似于接近临界点的物理系统,表明国内流离失所者处于临界状态。因此,IDP可以有效地响应序列组成的有限差异,并产生相当大的结构异质性,这有利于IDP相互作用和相形成。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

Scale-free Spatio-temporal Correlations in Conformational Fluctuations of Intrinsically Disordered Proteins

Scale-free Spatio-temporal Correlations in Conformational Fluctuations of Intrinsically Disordered Proteins

The self-assembly of intrinsically disordered proteins (IDPs) into condensed phases and the formation of membrane-less organelles (MLOs) can be considered as the phenomenon of collective behavior. The conformational dynamics of IDPs are essential for their interactions and the formation of a condensed phase. From a physical perspective, collective behavior and the emergence of phase are associated with long-range correlations. Here the conformational dynamics of IDPs and the correlations therein are analyzed, using µs-scale atomistic molecular dynamics (MD) simulations and single-molecule Förster resonance energy transfer (smFRET) experiments. The existence of typical scale-free spatio-temporal correlations in IDP conformational fluctuations is demonstrated. Their conformational evolutions exhibit “1/f noise” power spectra and are accompanied by the appearance of residue domains following a power-law size distribution. Additionally, the motions of residues present scale-free behavioral correlation. These scale-free correlations resemble those in physical systems near critical points, suggesting that IDPs are poised at a critical state. Therefore, IDPs can effectively respond to finite differences in sequence compositions and engender considerable structural heterogeneity which is beneficial for IDP interactions and phase formation.

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来源期刊
Advanced Science
Advanced Science CHEMISTRY, MULTIDISCIPLINARYNANOSCIENCE &-NANOSCIENCE & NANOTECHNOLOGY
CiteScore
18.90
自引率
2.60%
发文量
1602
审稿时长
1.9 months
期刊介绍: Advanced Science is a prestigious open access journal that focuses on interdisciplinary research in materials science, physics, chemistry, medical and life sciences, and engineering. The journal aims to promote cutting-edge research by employing a rigorous and impartial review process. It is committed to presenting research articles with the highest quality production standards, ensuring maximum accessibility of top scientific findings. With its vibrant and innovative publication platform, Advanced Science seeks to revolutionize the dissemination and organization of scientific knowledge.
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